Analysis of interatomic Contacts of Structural Units in PDB entry:
6TYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TYL entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 6TYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 434
A	GLU 436	ASP 439
A	ASP 441	ARG 491
C	VAL 2	SER 113
H	VAL 2	VAL 112
E	GLN 3	SER 121
J	GLN 3	SER 121
D	GLN 3	SER 123
I	GLN 3	SER 123
B	ARG 32	GLU 276

There are 72 helices in PDB entry 6TYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	13	Right-handed alpha
Helix 2	AA2	A	14	29	Right-handed alpha
Helix 3	AA3	A	39	56	Right-handed alpha
Helix 4	AA4	A	62	74	Right-handed alpha
Helix 5	AA5	A	76	84	Right-handed alpha
Helix 6	AA6	A	85	96	Right-handed alpha
Helix 7	AA7	A	110	126	Right-handed alpha
Helix 8	AA8	A	128	139	Right-handed alpha
Helix 9	AA9	A	140	150	Right-handed alpha
Helix 10	AB1	A	157	175	Right-handed alpha
Helix 11	AB2	A	175	184	Right-handed alpha
Helix 12	AB3	A	187	200	Right-handed alpha
Helix 13	AB4	A	213	232	Right-handed alpha
Helix 14	AB5	A	240	259	Right-handed alpha
Helix 15	AB6	A	266	281	Right-handed alpha
Helix 16	AB7	A	282	285	Right-handed 310
Helix 17	AB8	A	286	291	Right-handed alpha
Helix 18	AB9	A	306	320	Right-handed alpha
Helix 19	AC1	A	325	330	Right-handed alpha
Helix 20	AC2	A	330	343	Right-handed alpha
Helix 21	AC3	A	344	353	Right-handed alpha
Helix 22	AC4	A	371	380	Right-handed alpha
Helix 23	AC5	A	384	399	Right-handed alpha
Helix 24	AC6	A	402	407	Right-handed alpha
Helix 25	AC7	A	411	418	Right-handed alpha
Helix 26	AC8	A	444	448	Right-handed 310
Helix 27	AC9	A	470	475	Right-handed alpha
Helix 28	AD1	A	475	483	Right-handed alpha
Helix 29	AD2	J	86	90	Right-handed 310
Helix 30	AD3	D	53	56	Right-handed 310
Helix 31	AD4	D	87	91	Right-handed 310
Helix 32	AD5	I	53	56	Right-handed 310
Helix 33	AD6	I	87	91	Right-handed 310
Helix 34	AD7	B	46	50	Right-handed 310
Helix 35	AD8	B	227	231	Right-handed 310
Helix 36	AD9	B	242	256	Right-handed alpha
Helix 37	AE1	B	270	277	Right-handed alpha
Helix 38	AE2	B	278	280	Right-handed 310
Helix 39	AE3	B	295	310	Right-handed alpha
Helix 40	AE4	B	333	336	Right-handed 310
Helix 41	AE5	B	337	351	Right-handed alpha
Helix 42	AE6	G	45	49	Right-handed 310
Helix 43	AE7	G	241	255	Right-handed alpha
Helix 44	AE8	G	256	260	Right-handed 310
Helix 45	AE9	G	272	280	Right-handed 310
Helix 46	AF1	G	295	311	Right-handed alpha
Helix 47	AF2	G	334	351	Right-handed alpha
Helix 48	AF3	F	2	11	Right-handed alpha
Helix 49	AF4	F	17	29	Right-handed alpha
Helix 50	AF5	F	39	56	Right-handed alpha
Helix 51	AF6	F	62	74	Right-handed alpha
Helix 52	AF7	F	79	84	Right-handed alpha
Helix 53	AF8	F	85	96	Right-handed alpha
Helix 54	AF9	F	110	127	Right-handed alpha
Helix 55	AG1	F	128	139	Right-handed alpha
Helix 56	AG2	F	140	150	Right-handed alpha
Helix 57	AG3	F	157	175	Right-handed alpha
Helix 58	AG4	F	176	185	Right-handed alpha
Helix 59	AG5	F	187	201	Right-handed alpha
Helix 60	AG6	F	213	232	Right-handed alpha
Helix 61	AG7	F	240	259	Right-handed alpha
Helix 62	AG8	F	265	281	Right-handed alpha
Helix 63	AG9	F	285	290	Right-handed 310
Helix 64	AH1	F	306	320	Right-handed alpha
Helix 65	AH2	F	325	342	Right-handed alpha
Helix 66	AH3	F	344	355	Right-handed alpha
Helix 67	AH4	F	371	381	Right-handed alpha
Helix 68	AH5	F	386	399	Right-handed alpha
Helix 69	AH6	F	402	407	Right-handed alpha
Helix 70	AH7	F	412	417	Right-handed alpha
Helix 71	AH8	F	467	469	Right-handed 310
Helix 72	AH9	F	470	482	Right-handed alpha

There are 18 sheets in PDB entry 6TYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	261	262	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	A	304	305	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	70	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	91	97	anti-parallel
Strand 5	C	108	110	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	108	111	parallel
Strand 3	H	91	97	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	79	82	anti-parallel
Strand 4	E	67	70	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	51	first strand
Strand 2	E	34	39	anti-parallel
Strand 3	E	92	97	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	8	first strand
Strand 2	J	20	23	anti-parallel
Strand 3	J	79	81	anti-parallel
Strand 4	J	68	70	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	59	first strand
Strand 2	J	45	52	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	92	96	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	17	23	anti-parallel
Strand 3	I	78	84	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	118	122	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	35	38	parallel
Strand 3	B	220	224	parallel
Strand 4	B	263	268	parallel
Strand 5	B	319	323	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	40	first strand
Strand 2	G	220	225	parallel
Strand 3	G	263	268	parallel
Strand 4	G	320	323	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	212	first strand
Strand 2	F	261	262	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	301	first strand
Strand 2	F	304	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TYL