Analysis of interatomic Contacts of Structural Units in PDB entry:
6TYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TYU entry

There are 2 chains in PDB entry 6TYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6ILE 235
B
 LYS 9ALA 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 6TYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed 310
Helix 2
AA2
A
28 47Right-handed alpha
Helix 3
AA3
A
86 96Right-handed alpha
Helix 4
AA4
A
105 121Right-handed alpha
Helix 5
AA5
A
145 156Right-handed alpha
Helix 6
AA6
A
197 216Right-handed alpha
Helix 7
AA7
A
217 222Right-handed 310
Helix 8
AA8
A
226 234Right-handed alpha
Helix 9
AA9
B
14 19Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6TYU.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 83first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
8 14parallel
Strand 4
A
129 134parallel
Strand 5
A
158 164parallel
Strand 6
A
224 225parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il