Analysis of interatomic Contacts of Structural Units in PDB entry:
6TYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TYX entry

There are 4 chains in PDB entry 6TYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LYS 237
B
 MET -6PHE 236
C
 LYS 307MET 311
D
 LYS 305MET 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6TYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed 310
Helix 2
AA2
A
22 26Right-handed 310
Helix 3
AA3
A
28 48Right-handed alpha
Helix 4
AA4
A
86 96Right-handed alpha
Helix 5
AA5
A
105 121Right-handed alpha
Helix 6
AA6
A
142 144Right-handed 310
Helix 7
AA7
A
145 157Right-handed alpha
Helix 8
AA8
A
197 221Right-handed alpha
Helix 9
AA9
A
226 234Right-handed alpha
Helix 10
AB1
B
16 21Right-handed 310
Helix 11
AB2
B
28 47Right-handed alpha
Helix 12
AB3
B
86 96Right-handed alpha
Helix 13
AB4
B
105 121Right-handed alpha
Helix 14
AB5
B
142 144Right-handed 310
Helix 15
AB6
B
145 157Right-handed alpha
Helix 16
AB7
B
197 221Right-handed alpha
Helix 17
AB8
B
226 235Right-handed alpha
Helix 18
AB9
C
307 311Right-handed 310
Helix 19
AC1
D
307 311Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6TYX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 83first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
8 14parallel
Strand 4
A
129 134parallel
Strand 5
A
158 164parallel
Strand 6
A
223 225parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 83first strand
Strand 2
B
52 58anti-parallel
Strand 3
B
8 14parallel
Strand 4
B
129 134parallel
Strand 5
B
158 164parallel
Strand 6
B
223 225parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il