Analysis of interatomic Contacts of Structural Units in PDB entry:
6U05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U05 entry

There is 1 chain in PDB entry 6U05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 409GLN 832
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6U05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
424 436Right-handed alpha
Helix 2
AA2
A
445 447Right-handed 310
Helix 3
AA3
A
454 462Right-handed alpha
Helix 4
AA4
A
479 494Right-handed alpha
Helix 5
AA5
A
495 497Right-handed 310
Helix 6
AA6
A
517 530Right-handed alpha
Helix 7
AA7
A
546 559Right-handed alpha
Helix 8
AA8
A
568 572Right-handed 310
Helix 9
AA9
A
588 605Right-handed alpha
Helix 10
AB1
A
614 627Right-handed alpha
Helix 11
AB2
A
653 660Right-handed alpha
Helix 12
AB3
A
667 669Right-handed 310
Helix 13
AB4
A
670 675Right-handed alpha
Helix 14
AB5
A
689 693Right-handed 310
Helix 15
AB6
A
694 708Right-handed alpha
Helix 16
AB7
A
779 789Right-handed alpha
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There are 2 sheets in PDB entry 6U05. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 443first strand
Strand 2
A
470 474parallel
Strand 3
A
411 418parallel
Strand 4
A
503 510parallel
Strand 5
A
574 577parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
801 805first strand
Strand 2
A
808 814anti-parallel
Strand 3
A
717 734anti-parallel
Strand 4
A
821 830anti-parallel
Strand 5
A
647 652anti-parallel
Strand 6
A
681 687anti-parallel
Strand 7
A
767 772anti-parallel
Strand 8
A
738 750anti-parallel
Strand 9
A
717 734anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il