Analysis of interatomic Contacts of Structural Units in PDB entry:
6U07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U07 entry

There are 2 chains in PDB entry 6U07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 122PRO 209
B
 ASP 118ASP 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6U07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
171 174Right-handed 310
Helix 2
AA2
A
190 195Right-handed alpha
Helix 3
AA3
B
133 141Right-handed alpha
Helix 4
AA4
B
200 205Right-handed alpha
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There are 3 sheets in PDB entry 6U07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
175 184anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
126 132anti-parallel
Strand 5
B
126 131anti-parallel
Strand 6
B
142 152anti-parallel
Strand 7
B
190 199anti-parallel
Strand 8
B
172 174anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
175 184anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
126 132anti-parallel
Strand 5
B
126 131anti-parallel
Strand 6
B
142 152anti-parallel
Strand 7
B
190 199anti-parallel
Strand 8
B
179 180anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
157 163anti-parallel
Strand 3
B
209 216anti-parallel
Strand 4
B
235 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il