Analysis of interatomic Contacts of Structural Units in PDB entry:
6U08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U08 entry

There are 8 chains in PDB entry 6U08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1290	PRO 1422
B	MSE 1	LEU 123
C	GLY 1290	PRO 1422
D	MSE 1	LEU 123
E	SER 1291	PRO 1422
F	MSE 1	LEU 123
G	SER 1291	PRO 1422
H	MSE 1	LEU 123

There are 20 helices in PDB entry 6U08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1345	1357	Right-handed alpha
Helix 2	AA2	A	1373	1384	Right-handed alpha
Helix 3	AA3	B	14	22	Right-handed alpha
Helix 4	AA4	B	93	95	Right-handed 310
Helix 5	AA5	B	98	112	Right-handed alpha
Helix 6	AA6	C	1345	1357	Right-handed alpha
Helix 7	AA7	C	1373	1384	Right-handed alpha
Helix 8	AA8	D	14	22	Right-handed alpha
Helix 9	AA9	D	93	95	Right-handed 310
Helix 10	AB1	D	98	112	Right-handed alpha
Helix 11	AB2	E	1345	1357	Right-handed alpha
Helix 12	AB3	E	1373	1384	Right-handed alpha
Helix 13	AB4	F	14	22	Right-handed alpha
Helix 14	AB5	F	93	95	Right-handed 310
Helix 15	AB6	F	98	112	Right-handed alpha
Helix 16	AB7	G	1345	1358	Right-handed alpha
Helix 17	AB8	G	1373	1384	Right-handed alpha
Helix 18	AB9	H	14	22	Right-handed alpha
Helix 19	AC1	H	93	95	Right-handed 310
Helix 20	AC2	H	98	112	Right-handed alpha

There are 20 sheets in PDB entry 6U08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1291	1294	first strand
Strand 2	A	1297	1300	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1324	1330	first strand
Strand 2	A	1312	1318	anti-parallel
Strand 3	A	1361	1366	anti-parallel
Strand 4	A	1389	1393	parallel
Strand 5	A	1410	1413	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	2	5	anti-parallel
Strand 3	B	30	36	anti-parallel
Strand 4	B	44	50	anti-parallel
Strand 5	B	53	60	anti-parallel
Strand 6	B	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	2	5	anti-parallel
Strand 3	B	30	36	anti-parallel
Strand 4	B	44	50	anti-parallel
Strand 5	B	53	60	anti-parallel
Strand 6	B	63	67	anti-parallel
Strand 7	B	120	122	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	87	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1291	1294	first strand
Strand 2	C	1297	1300	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1324	1330	first strand
Strand 2	C	1312	1318	anti-parallel
Strand 3	C	1361	1366	anti-parallel
Strand 4	C	1389	1393	parallel
Strand 5	C	1410	1413	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	11	first strand
Strand 2	D	2	5	anti-parallel
Strand 3	D	30	36	anti-parallel
Strand 4	D	44	50	anti-parallel
Strand 5	D	53	60	anti-parallel
Strand 6	D	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	11	first strand
Strand 2	D	2	5	anti-parallel
Strand 3	D	30	36	anti-parallel
Strand 4	D	44	50	anti-parallel
Strand 5	D	53	60	anti-parallel
Strand 6	D	63	67	anti-parallel
Strand 7	D	120	122	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	87	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1292	1294	first strand
Strand 2	E	1297	1299	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1324	1330	first strand
Strand 2	E	1312	1318	anti-parallel
Strand 3	E	1361	1366	anti-parallel
Strand 4	E	1389	1393	parallel
Strand 5	E	1410	1413	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	11	first strand
Strand 2	F	2	5	anti-parallel
Strand 3	F	30	36	anti-parallel
Strand 4	F	44	50	anti-parallel
Strand 5	F	53	60	anti-parallel
Strand 6	F	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	11	first strand
Strand 2	F	2	5	anti-parallel
Strand 3	F	30	36	anti-parallel
Strand 4	F	44	50	anti-parallel
Strand 5	F	53	60	anti-parallel
Strand 6	F	63	67	anti-parallel
Strand 7	F	120	122	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	80	first strand
Strand 2	F	87	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1292	1294	first strand
Strand 2	G	1297	1299	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1324	1330	first strand
Strand 2	G	1312	1318	anti-parallel
Strand 3	G	1361	1366	anti-parallel
Strand 4	G	1389	1393	parallel
Strand 5	G	1410	1413	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	11	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	30	36	anti-parallel
Strand 4	H	44	50	anti-parallel
Strand 5	H	53	59	anti-parallel
Strand 6	H	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	11	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	30	36	anti-parallel
Strand 4	H	44	50	anti-parallel
Strand 5	H	53	59	anti-parallel
Strand 6	H	64	67	anti-parallel
Strand 7	H	120	122	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	80	first strand
Strand 2	H	87	91	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U08

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U08