Analysis of interatomic Contacts of Structural Units in PDB entry:
6U0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U0J entry

There are 2 chains in PDB entry 6U0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLU 308
B
 SER 1ASN 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6U0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
27 41Right-handed alpha
Helix 3
AA3
A
43 51Right-handed alpha
Helix 4
AA4
A
52 57Right-handed alpha
Helix 5
AA5
A
58 80Right-handed alpha
Helix 6
AA6
A
93 102Right-handed alpha
Helix 7
AA7
A
106 125Right-handed alpha
Helix 8
AA8
A
139 151Right-handed alpha
Helix 9
AA9
A
173 186Right-handed alpha
Helix 10
AB1
A
202 204Right-handed 310
Helix 11
AB2
A
205 218Right-handed alpha
Helix 12
AB3
A
239 251Right-handed alpha
Helix 13
AB4
A
257 267Right-handed alpha
Helix 14
AB5
A
279 289Right-handed alpha
Helix 15
AB6
A
299 308Right-handed alpha
Helix 16
AB7
B
2 16Right-handed alpha
Helix 17
AB8
B
18 22Right-handed 310
Helix 18
AB9
B
35 51Right-handed alpha
Helix 19
AC1
B
55 60Right-handed alpha
Helix 20
AC2
B
64 73Right-handed alpha
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There are 2 sheets in PDB entry 6U0J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
87 90parallel
Strand 3
A
4 8parallel
Strand 4
A
271 274parallel
Strand 5
A
293 296parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
156 163anti-parallel
Strand 5
A
255 256parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il