Analysis of interatomic Contacts of Structural Units in PDB entry:
6U0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U0O entry

There are 3 chains in PDB entry 6U0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6ARG 253
B
 LYS 6HIS 293
D
 LYS 203ASP 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6U0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 32Right-handed alpha
Helix 2
AA2
A
44 47Right-handed 310
Helix 3
AA3
A
48 61Right-handed alpha
Helix 4
AA4
A
63 68Right-handed alpha
Helix 5
AA5
A
76 105Right-handed alpha
Helix 6
AA6
A
110 115Right-handed 310
Helix 7
AA7
A
119 139Right-handed alpha
Helix 8
AA8
A
141 147Right-handed alpha
Helix 9
AA9
A
151 167Right-handed alpha
Helix 10
AB1
A
173 195Right-handed alpha
Helix 11
AB2
A
202 222Right-handed alpha
Helix 12
AB3
A
223 225Right-handed 310
Helix 13
AB4
A
227 252Right-handed alpha
Helix 14
AB5
B
9 31Right-handed alpha
Helix 15
AB6
B
32 34Right-handed 310
Helix 16
AB7
B
51 61Right-handed alpha
Helix 17
AB8
B
80 89Right-handed alpha
Helix 18
AB9
B
98 104Right-handed 310
Helix 19
AC1
B
113 121Right-handed alpha
Helix 20
AC2
B
124 130Right-handed alpha
Helix 21
AC3
B
130 141Right-handed alpha
Helix 22
AC4
B
144 155Right-handed alpha
Helix 23
AC5
B
157 165Right-handed alpha
Helix 24
AC6
B
186 198Right-handed alpha
Helix 25
AC7
B
202 219Right-handed alpha
Helix 26
AC8
B
221 225Right-handed 310
Helix 27
AC9
B
226 233Right-handed alpha
Helix 28
AD1
B
247 262Right-handed alpha
Helix 29
AD2
B
279 291Right-handed alpha
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There are 3 sheets in PDB entry 6U0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 274first strand
Strand 2
B
42 47parallel
Strand 3
D
204 206parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
76 78anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
172 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il