Analysis of interatomic Contacts of Structural Units in PDB entry:
6U11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U11 entry

There is 1 chain in PDB entry 6U11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16PRO 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6U11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 47Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
97 101Right-handed alpha
Helix 4
AA4
A
111 116Right-handed alpha
Helix 5
AA5
A
120 125Right-handed alpha
Helix 6
AA6
A
182 188Right-handed alpha
Helix 7
AA7
A
210 219Right-handed alpha
Helix 8
AA8
A
226 234Right-handed alpha
Helix 9
AA9
A
264 275Right-handed alpha
Helix 10
AB1
A
285 289Right-handed 310
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There are 4 sheets in PDB entry 6U11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
167 171anti-parallel
Strand 4
A
193 198anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 81first strand
Strand 2
A
84 95anti-parallel
Strand 3
A
249 254anti-parallel
Strand 4
A
238 243anti-parallel
Strand 5
A
279 283anti-parallel
Strand 6
A
202 205anti-parallel
Strand 7
A
208 209anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
132 135anti-parallel
Strand 4
A
291 293anti-parallel
Strand 5
A
296 297anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
155 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il