Analysis of interatomic Contacts of Structural Units in PDB entry:
6U1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U1B entry

There is 1 chain in PDB entry 6U1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 62GLN 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 6U1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 86Right-handed 310
Helix 2
AA2
A
115 120Right-handed alpha
Helix 3
AA3
A
121 123Right-handed 310
Helix 4
AA4
A
125 128Right-handed 310
Helix 5
AA5
A
173 178Right-handed alpha
Helix 6
AA6
A
265 276Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6U1B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
209 220anti-parallel
Strand 3
A
223 226anti-parallel
Strand 4
A
258 263anti-parallel
Strand 5
A
246 254anti-parallel
Strand 6
A
238 240anti-parallel
Strand 7
A
194 199anti-parallel
Strand 8
A
209 220anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
98 108anti-parallel
Strand 3
A
111 114anti-parallel
Strand 4
A
161 165anti-parallel
Strand 5
A
146 153anti-parallel
Strand 6
A
130 133anti-parallel
Strand 7
A
88 95anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il