Analysis of interatomic Contacts of Structural Units in PDB entry:
6U1C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U1C entry

There are 4 chains in PDB entry 6U1C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 0	HIS 324
B	MET 1	THR 319
C	GLU 0	HIS 322
D	MET 1	THR 319

There are 44 helices in PDB entry 6U1C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	28	Right-handed alpha
Helix 2	AA2	A	46	56	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	89	98	Right-handed alpha
Helix 5	AA5	A	106	115	Right-handed alpha
Helix 6	AA6	A	115	127	Right-handed alpha
Helix 7	AA7	A	168	170	Right-handed 310
Helix 8	AA8	A	171	179	Right-handed alpha
Helix 9	AA9	A	243	261	Right-handed alpha
Helix 10	AB1	A	293	301	Right-handed alpha
Helix 11	AB2	A	305	324	Right-handed alpha
Helix 12	AB3	B	13	28	Right-handed alpha
Helix 13	AB4	B	45	55	Right-handed alpha
Helix 14	AB5	B	70	74	Right-handed 310
Helix 15	AB6	B	89	99	Right-handed alpha
Helix 16	AB7	B	106	115	Right-handed alpha
Helix 17	AB8	B	115	126	Right-handed alpha
Helix 18	AB9	B	168	170	Right-handed 310
Helix 19	AC1	B	171	181	Right-handed alpha
Helix 20	AC2	B	243	262	Right-handed alpha
Helix 21	AC3	B	293	302	Right-handed alpha
Helix 22	AC4	B	305	318	Right-handed alpha
Helix 23	AC5	C	13	28	Right-handed alpha
Helix 24	AC6	C	46	56	Right-handed alpha
Helix 25	AC7	C	70	74	Right-handed 310
Helix 26	AC8	C	89	98	Right-handed alpha
Helix 27	AC9	C	106	115	Right-handed alpha
Helix 28	AD1	C	115	127	Right-handed alpha
Helix 29	AD2	C	168	170	Right-handed 310
Helix 30	AD3	C	171	180	Right-handed alpha
Helix 31	AD4	C	246	262	Right-handed alpha
Helix 32	AD5	C	294	301	Right-handed alpha
Helix 33	AD6	C	305	322	Right-handed alpha
Helix 34	AD7	D	13	28	Right-handed alpha
Helix 35	AD8	D	45	55	Right-handed alpha
Helix 36	AD9	D	70	74	Right-handed 310
Helix 37	AE1	D	89	99	Right-handed alpha
Helix 38	AE2	D	106	115	Right-handed alpha
Helix 39	AE3	D	117	127	Right-handed alpha
Helix 40	AE4	D	168	170	Right-handed 310
Helix 41	AE5	D	171	181	Right-handed alpha
Helix 42	AE6	D	243	261	Right-handed alpha
Helix 43	AE7	D	293	301	Right-handed alpha
Helix 44	AE8	D	305	318	Right-handed alpha

There are 12 sheets in PDB entry 6U1C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	32	37	anti-parallel
Strand 3	A	3	8	parallel
Strand 4	A	76	79	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	185	190	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	209	217	anti-parallel
Strand 3	A	196	203	anti-parallel
Strand 4	A	266	273	anti-parallel
Strand 5	A	278	284	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	32	37	anti-parallel
Strand 3	B	3	8	parallel
Strand 4	B	76	79	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	185	190	anti-parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	216	first strand
Strand 2	B	196	203	anti-parallel
Strand 3	B	266	274	anti-parallel
Strand 4	B	277	284	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	32	37	anti-parallel
Strand 3	C	3	8	parallel
Strand 4	C	76	79	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	150	154	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	209	216	anti-parallel
Strand 3	C	196	203	anti-parallel
Strand 4	C	266	273	anti-parallel
Strand 5	C	278	284	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	44	first strand
Strand 2	D	32	37	anti-parallel
Strand 3	D	3	8	parallel
Strand 4	D	76	79	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	D	185	190	anti-parallel
Strand 3	D	150	154	anti-parallel
Strand 4	D	164	166	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	216	first strand
Strand 2	D	196	203	anti-parallel
Strand 3	D	266	274	anti-parallel
Strand 4	D	277	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U1C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U1C