Analysis of interatomic Contacts of Structural Units in PDB entry:
6U1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U1D entry

There are 2 chains in PDB entry 6U1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1HIS 322
B
 MET -1HIS 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6U1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
45 56Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
89 99Right-handed alpha
Helix 5
AA5
A
106 115Right-handed alpha
Helix 6
AA6
A
115 126Right-handed alpha
Helix 7
AA7
A
168 170Right-handed 310
Helix 8
AA8
A
171 180Right-handed alpha
Helix 9
AA9
A
224 230Right-handed alpha
Helix 10
AB1
A
243 262Right-handed alpha
Helix 11
AB2
A
294 302Right-handed alpha
Helix 12
AB3
A
305 322Right-handed alpha
Helix 13
AB4
B
13 28Right-handed alpha
Helix 14
AB5
B
45 56Right-handed alpha
Helix 15
AB6
B
70 74Right-handed 310
Helix 16
AB7
B
89 99Right-handed alpha
Helix 17
AB8
B
106 115Right-handed alpha
Helix 18
AB9
B
115 126Right-handed alpha
Helix 19
AC1
B
168 170Right-handed 310
Helix 20
AC2
B
171 180Right-handed alpha
Helix 21
AC3
B
224 230Right-handed alpha
Helix 22
AC4
B
243 261Right-handed alpha
Helix 23
AC5
B
293 302Right-handed alpha
Helix 24
AC6
B
305 324Right-handed alpha
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There are 6 sheets in PDB entry 6U1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
3 8parallel
Strand 4
A
76 79parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
185 190anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
164 166anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
209 217anti-parallel
Strand 3
A
196 203anti-parallel
Strand 4
A
266 274anti-parallel
Strand 5
A
277 284anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
32 37anti-parallel
Strand 3
B
3 8parallel
Strand 4
B
76 79parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
185 190anti-parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
164 166anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
209 217anti-parallel
Strand 3
B
196 204anti-parallel
Strand 4
B
265 274anti-parallel
Strand 5
B
277 284anti-parallel
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