Analysis of interatomic Contacts of Structural Units in PDB entry:
6U1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U1J entry

There are 4 chains in PDB entry 6U1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 324
B	MET 1	HIS 322
C	MET 1	HIS 324
D	VAL 3	HIS 323

There are 46 helices in PDB entry 6U1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	28	Right-handed alpha
Helix 2	AA2	A	45	55	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	89	99	Right-handed alpha
Helix 5	AA5	A	106	115	Right-handed alpha
Helix 6	AA6	A	117	126	Right-handed alpha
Helix 7	AA7	A	168	170	Right-handed 310
Helix 8	AA8	A	171	181	Right-handed alpha
Helix 9	AA9	A	224	230	Right-handed alpha
Helix 10	AB1	A	243	261	Right-handed alpha
Helix 11	AB2	A	294	302	Right-handed alpha
Helix 12	AB3	A	305	324	Right-handed alpha
Helix 13	AB4	B	13	26	Right-handed alpha
Helix 14	AB5	B	45	55	Right-handed alpha
Helix 15	AB6	B	70	74	Right-handed 310
Helix 16	AB7	B	89	99	Right-handed alpha
Helix 17	AB8	B	106	115	Right-handed alpha
Helix 18	AB9	B	115	126	Right-handed alpha
Helix 19	AC1	B	168	170	Right-handed 310
Helix 20	AC2	B	171	181	Right-handed alpha
Helix 21	AC3	B	243	261	Right-handed alpha
Helix 22	AC4	B	293	302	Right-handed alpha
Helix 23	AC5	B	305	321	Right-handed alpha
Helix 24	AC6	C	13	28	Right-handed alpha
Helix 25	AC7	C	45	56	Right-handed alpha
Helix 26	AC8	C	70	74	Right-handed 310
Helix 27	AC9	C	89	99	Right-handed alpha
Helix 28	AD1	C	106	115	Right-handed alpha
Helix 29	AD2	C	117	126	Right-handed alpha
Helix 30	AD3	C	168	170	Right-handed 310
Helix 31	AD4	C	171	180	Right-handed alpha
Helix 32	AD5	C	224	230	Right-handed alpha
Helix 33	AD6	C	243	261	Right-handed alpha
Helix 34	AD7	C	294	302	Right-handed alpha
Helix 35	AD8	C	305	324	Right-handed alpha
Helix 36	AD9	D	13	28	Right-handed alpha
Helix 37	AE1	D	45	55	Right-handed alpha
Helix 38	AE2	D	70	74	Right-handed 310
Helix 39	AE3	D	89	98	Right-handed alpha
Helix 40	AE4	D	106	114	Right-handed alpha
Helix 41	AE5	D	117	126	Right-handed alpha
Helix 42	AE6	D	168	170	Right-handed 310
Helix 43	AE7	D	171	180	Right-handed alpha
Helix 44	AE8	D	243	261	Right-handed alpha
Helix 45	AE9	D	293	302	Right-handed alpha
Helix 46	AF1	D	305	323	Right-handed alpha

There are 12 sheets in PDB entry 6U1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	32	37	anti-parallel
Strand 3	A	3	8	parallel
Strand 4	A	76	79	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	185	190	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	209	217	anti-parallel
Strand 3	A	196	203	anti-parallel
Strand 4	A	266	274	anti-parallel
Strand 5	A	277	284	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	32	37	anti-parallel
Strand 3	B	3	8	parallel
Strand 4	B	76	80	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	185	190	anti-parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	209	216	anti-parallel
Strand 3	B	196	203	anti-parallel
Strand 4	B	266	274	anti-parallel
Strand 5	B	277	284	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	32	37	anti-parallel
Strand 3	C	3	8	parallel
Strand 4	C	76	79	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	150	154	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	209	218	anti-parallel
Strand 3	C	196	203	anti-parallel
Strand 4	C	266	274	anti-parallel
Strand 5	C	277	284	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	44	first strand
Strand 2	D	33	37	anti-parallel
Strand 3	D	4	8	parallel
Strand 4	D	77	80	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	D	185	190	anti-parallel
Strand 3	D	150	154	anti-parallel
Strand 4	D	164	166	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	215	first strand
Strand 2	D	196	203	anti-parallel
Strand 3	D	266	274	anti-parallel
Strand 4	D	277	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U1J