Analysis of interatomic Contacts of Structural Units in PDB entry:
6U1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U1R entry

There are 2 chains in PDB entry 6U1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 20PHE 377
B
 CYS 20PHE 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6U1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 55Right-handed 310
Helix 2
AA2
A
56 67Right-handed alpha
Helix 3
AA3
A
76 97Right-handed alpha
Helix 4
AA4
A
128 132Right-handed alpha
Helix 5
AA5
A
147 151Right-handed 310
Helix 6
AA6
A
152 156Right-handed 310
Helix 7
AA7
A
157 167Right-handed alpha
Helix 8
AA8
A
180 184Right-handed 310
Helix 9
AA9
A
209 211Right-handed 310
Helix 10
AB1
A
229 240Right-handed alpha
Helix 11
AB2
A
279 283Right-handed 310
Helix 12
AB3
A
284 290Right-handed 310
Helix 13
AB4
A
310 316Right-handed 310
Helix 14
AB5
A
331 341Right-handed alpha
Helix 15
AB6
A
350 357Right-handed 310
Helix 16
AB7
B
50 54Right-handed 310
Helix 17
AB8
B
76 97Right-handed alpha
Helix 18
AB9
B
128 132Right-handed alpha
Helix 19
AC1
B
147 151Right-handed 310
Helix 20
AC2
B
152 156Right-handed 310
Helix 21
AC3
B
157 167Right-handed alpha
Helix 22
AC4
B
180 184Right-handed 310
Helix 23
AC5
B
209 211Right-handed 310
Helix 24
AC6
B
229 240Right-handed alpha
Helix 25
AC7
B
279 283Right-handed 310
Helix 26
AC8
B
284 290Right-handed 310
Helix 27
AC9
B
310 316Right-handed 310
Helix 28
AD1
B
331 341Right-handed alpha
Helix 29
AD2
B
350 357Right-handed 310
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There are 12 sheets in PDB entry 6U1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
31 36parallel
Strand 3
A
364 369anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
119 120anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
170 173parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
219 222anti-parallel
Strand 3
A
245 248parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
270 273anti-parallel
Strand 3
A
291 294parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
324 328anti-parallel
Strand 3
A
344 348parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 103first strand
Strand 2
B
31 36parallel
Strand 3
B
364 369anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
119 120anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
170 173parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
219 223anti-parallel
Strand 3
B
245 249parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 267first strand
Strand 2
B
270 273anti-parallel
Strand 3
B
291 294parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
324 328anti-parallel
Strand 3
B
344 348parallel
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