Analysis of interatomic Contacts of Structural Units in PDB entry:
6U28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U28 entry

There are 4 chains in PDB entry 6U28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 86PRO 212
C
 GLY 433ILE 597
B
 ALA 86ARG 204
D
 GLY 433ILE 597
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6U28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 100Right-handed alpha
Helix 2
AA2
A
170 187Right-handed alpha
Helix 3
AA3
A
195 202Right-handed alpha
Helix 4
AA4
C
434 491Right-handed alpha
Helix 5
AA5
C
535 562Right-handed alpha
Helix 6
AA6
C
563 584Right-handed alpha
Helix 7
AA7
C
587 595Right-handed alpha
Helix 8
AA8
B
94 100Right-handed alpha
Helix 9
AA9
B
170 188Right-handed alpha
Helix 10
AB1
B
195 202Right-handed alpha
Helix 11
AB2
D
434 498Right-handed alpha
Helix 12
AB3
D
525 562Right-handed alpha
Helix 13
AB4
D
563 584Right-handed alpha
Helix 14
AB5
D
587 596Right-handed alpha
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There are 4 sheets in PDB entry 6U28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
127 137anti-parallel
Strand 3
A
140 151anti-parallel
Strand 4
A
156 162anti-parallel
Strand 5
A
115 120anti-parallel
Strand 6
A
107 112anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
127 137anti-parallel
Strand 3
A
191 194parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
127 137anti-parallel
Strand 3
B
141 151anti-parallel
Strand 4
B
156 162anti-parallel
Strand 5
B
115 120anti-parallel
Strand 6
B
107 112anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
127 137anti-parallel
Strand 3
B
191 194parallel
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