Analysis of interatomic Contacts of Structural Units in PDB entry:
6U2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U2M entry

There are 2 chains in PDB entry 6U2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4ALA 489
C
 ILE 4ALA 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6U2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 19Right-handed alpha
Helix 2
AA2
A
31 36Right-handed alpha
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
49 54Right-handed alpha
Helix 5
AA5
A
56 60Right-handed 310
Helix 6
AA6
A
65 74Right-handed alpha
Helix 7
AA7
A
75 77Right-handed 310
Helix 8
AA8
A
78 81Right-handed 310
Helix 9
AA9
A
82 88Right-handed alpha
Helix 10
AB1
A
98 115Right-handed alpha
Helix 11
AB2
A
131 142Right-handed alpha
Helix 12
AB3
A
156 161Right-handed alpha
Helix 13
AB4
A
161 176Right-handed alpha
Helix 14
AB5
A
242 247Right-handed 310
Helix 15
AB6
A
249 254Right-handed alpha
Helix 16
AB7
A
278 293Right-handed alpha
Helix 17
AB8
A
304 317Right-handed alpha
Helix 18
AB9
A
347 362Right-handed alpha
Helix 19
AC1
A
370 381Right-handed alpha
Helix 20
AC2
A
386 396Right-handed alpha
Helix 21
AC3
A
407 418Right-handed alpha
Helix 22
AC4
A
424 435Right-handed alpha
Helix 23
AC5
A
443 454Right-handed alpha
Helix 24
AC6
A
459 471Right-handed alpha
Helix 25
AC7
A
480 489Right-handed alpha
Helix 26
AC8
C
6 20Right-handed alpha
Helix 27
AC9
C
31 36Right-handed alpha
Helix 28
AD1
C
37 46Right-handed alpha
Helix 29
AD2
C
49 54Right-handed alpha
Helix 30
AD3
C
56 60Right-handed 310
Helix 31
AD4
C
65 74Right-handed alpha
Helix 32
AD5
C
75 77Right-handed 310
Helix 33
AD6
C
78 81Right-handed 310
Helix 34
AD7
C
82 92Right-handed alpha
Helix 35
AD8
C
98 115Right-handed alpha
Helix 36
AD9
C
131 142Right-handed alpha
Helix 37
AE1
C
156 161Right-handed alpha
Helix 38
AE2
C
161 175Right-handed alpha
Helix 39
AE3
C
242 247Right-handed 310
Helix 40
AE4
C
249 253Right-handed 310
Helix 41
AE5
C
278 293Right-handed alpha
Helix 42
AE6
C
304 317Right-handed alpha
Helix 43
AE7
C
347 362Right-handed alpha
Helix 44
AE8
C
370 381Right-handed alpha
Helix 45
AE9
C
386 396Right-handed alpha
Helix 46
AF1
C
407 420Right-handed alpha
Helix 47
AF2
C
424 435Right-handed alpha
Helix 48
AF3
C
444 454Right-handed alpha
Helix 49
AF4
C
459 471Right-handed alpha
Helix 50
AF5
C
480 488Right-handed alpha
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There are 6 sheets in PDB entry 6U2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 153first strand
Strand 2
A
119 126parallel
Strand 3
A
321 327parallel
Strand 4
A
298 303parallel
Strand 5
A
233 236parallel
Strand 6
A
259 262parallel
Strand 7
A
218 225anti-parallel
Strand 8
A
211 215anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
405 406anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
478 479anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 153first strand
Strand 2
C
119 126parallel
Strand 3
C
321 327parallel
Strand 4
C
298 303parallel
Strand 5
C
233 236parallel
Strand 6
C
259 262parallel
Strand 7
C
218 225anti-parallel
Strand 8
C
211 215anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
368 369first strand
Strand 2
C
405 406anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
441 443first strand
Strand 2
C
477 479anti-parallel
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