Analysis of interatomic Contacts of Structural Units in PDB entry:
6U3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U3T entry

There are 2 chains in PDB entry 6U3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 18ASN 293
B
 SER 16ASN 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 6U3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
205 210Right-handed 310
Helix 2
AA2
A
212 216Right-handed 310
Helix 3
AA3
B
205 210Right-handed 310
Helix 4
AA4
B
212 216Right-handed 310
Helix 5
AA5
B
217 222Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 6U3T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 29first strand
Strand 2
A
34 44anti-parallel
Strand 3
A
60 61anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 29first strand
Strand 2
A
34 44anti-parallel
Strand 3
A
50 57anti-parallel
Strand 4
A
228 235anti-parallel
Strand 5
A
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
75 89anti-parallel
Strand 3
A
164 171anti-parallel
Strand 4
A
153 158anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
75 89anti-parallel
Strand 3
A
242 260anti-parallel
Strand 4
A
265 285anti-parallel
Strand 5
A
290 292anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
144 149anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 29first strand
Strand 2
B
34 45anti-parallel
Strand 3
B
60 61anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 29first strand
Strand 2
B
34 45anti-parallel
Strand 3
B
50 57anti-parallel
Strand 4
B
228 235anti-parallel
Strand 5
B
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
75 89anti-parallel
Strand 3
B
164 171anti-parallel
Strand 4
B
153 158anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
75 89anti-parallel
Strand 3
B
242 260anti-parallel
Strand 4
B
265 285anti-parallel
Strand 5
B
290 292anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
144 149anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il