Analysis of interatomic Contacts of Structural Units in PDB entry:
6U3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U3V entry

There are 4 chains in PDB entry 6U3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16SER 307
B
 GLU 843ARG 1224
C
 ASP 17PRO 306
D
 PHE 907ARG 1224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 6U3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 28Right-handed alpha
Helix 2
AA2
A
30 39Right-handed alpha
Helix 3
AA3
A
46 63Right-handed alpha
Helix 4
AA4
A
65 73Right-handed alpha
Helix 5
AA5
A
78 93Right-handed alpha
Helix 6
AA6
A
96 111Right-handed alpha
Helix 7
AA7
A
116 130Right-handed alpha
Helix 8
AA8
A
132 141Right-handed alpha
Helix 9
AA9
A
145 159Right-handed alpha
Helix 10
AB1
A
161 176Right-handed alpha
Helix 11
AB2
A
179 194Right-handed alpha
Helix 12
AB3
A
196 210Right-handed alpha
Helix 13
AB4
A
215 229Right-handed alpha
Helix 14
AB5
A
231 246Right-handed alpha
Helix 15
AB6
A
249 263Right-handed alpha
Helix 16
AB7
A
266 278Right-handed alpha
Helix 17
AB8
A
285 305Right-handed alpha
Helix 18
AB9
B
915 924Right-handed alpha
Helix 19
AC1
B
926 933Right-handed alpha
Helix 20
AC2
B
935 948Right-handed alpha
Helix 21
AC3
B
952 954Right-handed 310
Helix 22
AC4
B
955 965Right-handed alpha
Helix 23
AC5
B
986 990Right-handed 310
Helix 24
AC6
B
1002 1020Right-handed alpha
Helix 25
AC7
B
1021 1036Right-handed alpha
Helix 26
AC8
B
1037 1039Right-handed 310
Helix 27
AC9
B
1043 1073Right-handed alpha
Helix 28
AD1
B
1077 1092Right-handed alpha
Helix 29
AD2
B
1097 1116Right-handed alpha
Helix 30
AD3
B
1117 1131Right-handed alpha
Helix 31
AD4
B
1134 1150Right-handed alpha
Helix 32
AD5
B
1193 1197Right-handed 310
Helix 33
AD6
B
1219 1223Right-handed 310
Helix 34
AD7
C
19 28Right-handed alpha
Helix 35
AD8
C
30 39Right-handed alpha
Helix 36
AD9
C
46 63Right-handed alpha
Helix 37
AE1
C
65 73Right-handed alpha
Helix 38
AE2
C
78 93Right-handed alpha
Helix 39
AE3
C
96 110Right-handed alpha
Helix 40
AE4
C
116 130Right-handed alpha
Helix 41
AE5
C
132 141Right-handed alpha
Helix 42
AE6
C
145 159Right-handed alpha
Helix 43
AE7
C
161 176Right-handed alpha
Helix 44
AE8
C
179 194Right-handed alpha
Helix 45
AE9
C
196 212Right-handed alpha
Helix 46
AF1
C
215 229Right-handed alpha
Helix 47
AF2
C
231 246Right-handed alpha
Helix 48
AF3
C
249 263Right-handed alpha
Helix 49
AF4
C
266 278Right-handed alpha
Helix 50
AF5
C
285 305Right-handed alpha
Helix 51
AF6
D
915 924Right-handed alpha
Helix 52
AF7
D
926 933Right-handed alpha
Helix 53
AF8
D
935 947Right-handed alpha
Helix 54
AF9
D
952 954Right-handed 310
Helix 55
AG1
D
955 965Right-handed alpha
Helix 56
AG2
D
986 990Right-handed 310
Helix 57
AG3
D
1002 1020Right-handed alpha
Helix 58
AG4
D
1021 1036Right-handed alpha
Helix 59
AG5
D
1037 1039Right-handed 310
Helix 60
AG6
D
1043 1071Right-handed alpha
Helix 61
AG7
D
1077 1093Right-handed alpha
Helix 62
AG8
D
1097 1116Right-handed alpha
Helix 63
AG9
D
1117 1132Right-handed alpha
Helix 64
AH1
D
1134 1149Right-handed alpha
Helix 65
AH2
D
1193 1197Right-handed 310
Helix 66
AH3
D
1219 1223Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6U3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
968 970first strand
Strand 2
B
979 981anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1166 1168first strand
Strand 2
B
1175 1177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1183 1184first strand
Strand 2
B
1191 1192anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
968 970first strand
Strand 2
D
979 981anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1166 1168first strand
Strand 2
D
1175 1177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1183 1184first strand
Strand 2
D
1191 1192anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il