Analysis of interatomic Contacts of Structural Units in PDB entry:
6U3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U3Y entry

There are 3 chains in PDB entry 6U3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 301
B
 ILE 4ASN 284
D
 GLY 10ASN 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 6U3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
202 206Right-handed 310
Helix 2
AA2
A
209 213Right-handed 310
Helix 3
AA3
A
214 219Right-handed alpha
Helix 4
AA4
B
187 192Right-handed 310
Helix 5
AA5
B
194 198Right-handed 310
Helix 6
AA6
B
199 204Right-handed alpha
Helix 7
AA7
D
187 192Right-handed 310
Helix 8
AA8
D
194 198Right-handed 310
Helix 9
AA9
D
199 204Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 6U3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 27first strand
Strand 2
A
32 43anti-parallel
Strand 3
A
48 60anti-parallel
Strand 4
A
225 232anti-parallel
Strand 5
A
94 100anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 27first strand
Strand 2
A
32 43anti-parallel
Strand 3
A
48 60anti-parallel
Strand 4
A
220 221anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
161 168anti-parallel
Strand 3
A
73 87anti-parallel
Strand 4
A
238 256anti-parallel
Strand 5
A
261 281anti-parallel
Strand 6
A
286 296anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 143first strand
Strand 2
A
107 119anti-parallel
Strand 3
B
129 140anti-parallel
Strand 4
B
104 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
176 179anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
27 37anti-parallel
Strand 3
B
44 55anti-parallel
Strand 4
B
210 216anti-parallel
Strand 5
B
89 95anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
27 37anti-parallel
Strand 3
B
44 55anti-parallel
Strand 4
B
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
69 83anti-parallel
Strand 3
B
153 160anti-parallel
Strand 4
B
142 150anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
69 83anti-parallel
Strand 3
B
223 243anti-parallel
Strand 4
B
249 272anti-parallel
Strand 5
B
277 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
168 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 22first strand
Strand 2
D
27 38anti-parallel
Strand 3
D
43 55anti-parallel
Strand 4
D
210 217anti-parallel
Strand 5
D
89 95anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 22first strand
Strand 2
D
27 38anti-parallel
Strand 3
D
43 55anti-parallel
Strand 4
D
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 62first strand
Strand 2
D
69 84anti-parallel
Strand 3
D
153 160anti-parallel
Strand 4
D
142 150anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 62first strand
Strand 2
D
69 84anti-parallel
Strand 3
D
223 243anti-parallel
Strand 4
D
249 272anti-parallel
Strand 5
D
277 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 109first strand
Strand 2
D
133 138anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 165first strand
Strand 2
D
168 171anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il