Analysis of interatomic Contacts of Structural Units in PDB entry:
6U43


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U43 entry

There is 1 chain in PDB entry 6U43 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2PRO 729
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6U43. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 16Right-handed alpha
Helix 2
AA2
A
17 19Right-handed 310
Helix 3
AA3
A
33 45Right-handed alpha
Helix 4
AA4
A
62 69Right-handed alpha
Helix 5
AA5
A
98 100Right-handed 310
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
126 139Right-handed alpha
Helix 8
AA8
A
149 156Right-handed alpha
Helix 9
AA9
A
160 183Right-handed alpha
Helix 10
AB1
A
186 191Right-handed alpha
Helix 11
AB2
A
211 219Right-handed alpha
Helix 12
AB3
A
221 231Right-handed alpha
Helix 13
AB4
A
233 241Right-handed alpha
Helix 14
AB5
A
242 255Right-handed alpha
Helix 15
AB6
A
257 270Right-handed alpha
Helix 16
AB7
A
276 284Right-handed alpha
Helix 17
AB8
A
399 401Right-handed 310
Helix 18
AB9
A
402 417Right-handed alpha
Helix 19
AC1
A
437 452Right-handed alpha
Helix 20
AC2
A
495 504Right-handed alpha
Helix 21
AC3
A
512 523Right-handed alpha
Helix 22
AC4
A
526 532Right-handed alpha
Helix 23
AC5
A
551 569Right-handed alpha
Helix 24
AC6
A
592 596Right-handed 310
Helix 25
AC7
A
597 616Right-handed alpha
Helix 26
AC8
A
635 645Right-handed alpha
Helix 27
AC9
A
669 671Right-handed 310
Helix 28
AD1
A
673 682Right-handed alpha
Helix 29
AD2
A
699 701Right-handed 310
Helix 30
AD3
A
702 715Right-handed alpha
Helix 31
AD4
A
722 726Right-handed 310
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There are 8 sheets in PDB entry 6U43. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 83first strand
Strand 2
A
86 94anti-parallel
Strand 3
A
21 27parallel
Strand 4
A
114 120parallel
Strand 5
A
142 148parallel
Strand 6
A
199 203parallel
Strand 7
A
208 210anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
322 325anti-parallel
Strand 3
A
370 372anti-parallel
Strand 4
A
292 301anti-parallel
Strand 5
A
305 314anti-parallel
Strand 6
A
356 360anti-parallel
Strand 7
A
336 341anti-parallel
Strand 8
A
344 348anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 318first strand
Strand 2
A
350 352anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
391 397anti-parallel
Strand 4
A
456 458anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
391 397anti-parallel
Strand 4
A
462 463anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
619 632anti-parallel
Strand 3
A
659 667anti-parallel
Strand 4
A
649 656anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
619 632anti-parallel
Strand 3
A
687 697anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 479first strand
Strand 2
A
486 493anti-parallel
Strand 3
A
580 588anti-parallel
Strand 4
A
541 544parallel
Strand 5
A
533 536anti-parallel
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