Analysis of interatomic Contacts of Structural Units in PDB entry:
6U45

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U45 entry

There are 2 chains in PDB entry 6U45 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	SER 728
B	ARG 4	ILE 602

There are 59 helices in PDB entry 6U45. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	16	Right-handed alpha
Helix 2	AA2	A	17	19	Right-handed 310
Helix 3	AA3	A	33	45	Right-handed alpha
Helix 4	AA4	A	49	57	Right-handed 310
Helix 5	AA5	A	62	68	Right-handed alpha
Helix 6	AA6	A	98	100	Right-handed 310
Helix 7	AA7	A	101	112	Right-handed alpha
Helix 8	AA8	A	126	138	Right-handed alpha
Helix 9	AA9	A	149	156	Right-handed alpha
Helix 10	AB1	A	160	183	Right-handed alpha
Helix 11	AB2	A	186	191	Right-handed alpha
Helix 12	AB3	A	211	217	Right-handed alpha
Helix 13	AB4	A	221	231	Right-handed alpha
Helix 14	AB5	A	233	241	Right-handed alpha
Helix 15	AB6	A	242	255	Right-handed alpha
Helix 16	AB7	A	257	270	Right-handed alpha
Helix 17	AB8	A	276	284	Right-handed alpha
Helix 18	AB9	A	399	401	Right-handed 310
Helix 19	AC1	A	402	417	Right-handed alpha
Helix 20	AC2	A	437	451	Right-handed alpha
Helix 21	AC3	A	495	504	Right-handed alpha
Helix 22	AC4	A	512	523	Right-handed alpha
Helix 23	AC5	A	526	532	Right-handed alpha
Helix 24	AC6	A	551	568	Right-handed alpha
Helix 25	AC7	A	592	596	Right-handed 310
Helix 26	AC8	A	597	616	Right-handed alpha
Helix 27	AC9	A	635	645	Right-handed alpha
Helix 28	AD1	A	669	671	Right-handed 310
Helix 29	AD2	A	673	682	Right-handed alpha
Helix 30	AD3	A	702	715	Right-handed alpha
Helix 31	AD4	A	722	726	Right-handed 310
Helix 32	AD5	B	5	16	Right-handed alpha
Helix 33	AD6	B	17	19	Right-handed 310
Helix 34	AD7	B	33	45	Right-handed alpha
Helix 35	AD8	B	98	100	Right-handed 310
Helix 36	AD9	B	101	112	Right-handed alpha
Helix 37	AE1	B	126	139	Right-handed alpha
Helix 38	AE2	B	149	156	Right-handed alpha
Helix 39	AE3	B	160	183	Right-handed alpha
Helix 40	AE4	B	186	191	Right-handed alpha
Helix 41	AE5	B	211	219	Right-handed alpha
Helix 42	AE6	B	221	231	Right-handed alpha
Helix 43	AE7	B	233	241	Right-handed alpha
Helix 44	AE8	B	242	255	Right-handed alpha
Helix 45	AE9	B	257	270	Right-handed alpha
Helix 46	AF1	B	276	284	Right-handed alpha
Helix 47	AF2	B	402	417	Right-handed alpha
Helix 48	AF3	B	437	450	Right-handed alpha
Helix 49	AF4	B	495	504	Right-handed alpha
Helix 50	AF5	B	512	523	Right-handed alpha
Helix 51	AF6	B	526	532	Right-handed alpha
Helix 52	AF7	B	552	569	Right-handed alpha
Helix 53	AF8	B	592	596	Right-handed 310
Helix 54	AF9	B	597	616	Right-handed alpha
Helix 55	AG1	B	635	645	Right-handed alpha
Helix 56	AG2	B	669	671	Right-handed 310
Helix 57	AG3	B	673	682	Right-handed alpha
Helix 58	AG4	B	699	715	Right-handed alpha
Helix 59	AG5	B	722	726	Right-handed 310

There are 16 sheets in PDB entry 6U45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	83	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	21	27	parallel
Strand 4	A	114	120	parallel
Strand 5	A	142	148	parallel
Strand 6	A	199	203	parallel
Strand 7	A	208	210	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	322	325	anti-parallel
Strand 3	A	370	372	anti-parallel
Strand 4	A	292	301	anti-parallel
Strand 5	A	305	314	anti-parallel
Strand 6	A	356	360	anti-parallel
Strand 7	A	337	341	anti-parallel
Strand 8	A	344	348	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	351	352	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	391	397	anti-parallel
Strand 4	A	456	458	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	391	397	anti-parallel
Strand 4	A	462	463	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	469	first strand
Strand 2	A	618	632	anti-parallel
Strand 3	A	659	667	anti-parallel
Strand 4	A	649	656	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	469	first strand
Strand 2	A	618	632	anti-parallel
Strand 3	A	687	697	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	479	first strand
Strand 2	A	486	493	anti-parallel
Strand 3	A	580	588	anti-parallel
Strand 4	A	540	544	parallel
Strand 5	A	533	537	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	83	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	21	27	parallel
Strand 4	B	114	120	parallel
Strand 5	B	142	148	parallel
Strand 6	B	199	203	parallel
Strand 7	B	208	210	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	322	325	anti-parallel
Strand 3	B	370	372	anti-parallel
Strand 4	B	292	301	anti-parallel
Strand 5	B	305	314	anti-parallel
Strand 6	B	355	360	anti-parallel
Strand 7	B	336	341	anti-parallel
Strand 8	B	344	348	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	318	first strand
Strand 2	B	350	352	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	B	430	435	anti-parallel
Strand 3	B	391	397	anti-parallel
Strand 4	B	456	458	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	B	430	435	anti-parallel
Strand 3	B	391	397	anti-parallel
Strand 4	B	462	463	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	469	first strand
Strand 2	B	618	632	anti-parallel
Strand 3	B	659	667	anti-parallel
Strand 4	B	649	656	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	469	first strand
Strand 2	B	618	632	anti-parallel
Strand 3	B	687	697	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	479	first strand
Strand 2	B	486	493	anti-parallel
Strand 3	B	580	588	anti-parallel
Strand 4	B	540	544	parallel
Strand 5	B	533	537	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U45

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U45