Analysis of interatomic Contacts of Structural Units in PDB entry:
6U4P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U4P entry

There are 5 chains in PDB entry 6U4P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ASN 293
B	ALA 1	ASN 293
C	ALA 1	ASN 293
D	ALA 1	ASN 293
E	ALA 1	ALA 83

There are 28 helices in PDB entry 6U4P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	205	209	Right-handed 310
Helix 3	AA3	A	212	216	Right-handed 310
Helix 4	AA4	A	217	221	Right-handed 310
Helix 5	AA5	B	1	6	Right-handed 310
Helix 6	AA6	B	205	209	Right-handed 310
Helix 7	AA7	B	212	216	Right-handed 310
Helix 8	AA8	B	217	221	Right-handed 310
Helix 9	AA9	C	1	6	Right-handed 310
Helix 10	AB1	C	205	209	Right-handed 310
Helix 11	AB2	C	212	216	Right-handed 310
Helix 12	AB3	C	217	221	Right-handed 310
Helix 13	AB4	D	1	6	Right-handed 310
Helix 14	AB5	D	205	209	Right-handed 310
Helix 15	AB6	D	212	216	Right-handed 310
Helix 16	AB7	D	217	221	Right-handed 310
Helix 17	AB8	E	1	6	Right-handed 310
Helix 18	AB9	E	205	209	Right-handed 310
Helix 19	AC1	E	212	216	Right-handed 310
Helix 20	AC2	E	217	221	Right-handed 310
Helix 21	AC3	F	1	6	Right-handed 310
Helix 22	AC4	F	205	209	Right-handed 310
Helix 23	AC5	F	212	216	Right-handed 310
Helix 24	AC6	F	217	221	Right-handed 310
Helix 25	AC7	G	1	6	Right-handed 310
Helix 26	AC8	G	205	209	Right-handed 310
Helix 27	AC9	G	212	216	Right-handed 310
Helix 28	AD1	G	217	221	Right-handed 310

There are 29 sheets in PDB entry 6U4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	29	first strand
Strand 2	A	34	43	anti-parallel
Strand 3	A	51	61	anti-parallel
Strand 4	A	228	234	anti-parallel
Strand 5	A	97	102	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	75	89	anti-parallel
Strand 3	A	164	171	anti-parallel
Strand 4	A	153	158	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	75	89	anti-parallel
Strand 3	A	242	260	anti-parallel
Strand 4	A	265	285	anti-parallel
Strand 5	A	290	292	anti-parallel

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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	127	first strand
Strand 2	A	132	149	anti-parallel
Strand 3	G	111	127	anti-parallel
Strand 4	G	132	149	anti-parallel
Strand 5	F	111	127	anti-parallel
Strand 6	F	132	149	anti-parallel
Strand 7	E	111	127	anti-parallel
Strand 8	E	132	149	anti-parallel
Strand 9	D	111	127	anti-parallel
Strand 10	D	132	149	anti-parallel
Strand 11	C	111	127	anti-parallel
Strand 12	C	132	149	anti-parallel
Strand 13	B	111	127	anti-parallel
Strand 14	B	132	151	anti-parallel
Strand 15	A	109	127	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	179	182	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	29	first strand
Strand 2	B	34	43	anti-parallel
Strand 3	B	51	61	anti-parallel
Strand 4	B	228	234	anti-parallel
Strand 5	B	97	102	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	75	89	anti-parallel
Strand 3	B	164	171	anti-parallel
Strand 4	B	153	158	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	75	89	anti-parallel
Strand 3	B	242	260	anti-parallel
Strand 4	B	265	285	anti-parallel
Strand 5	B	290	292	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	179	182	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	29	first strand
Strand 2	C	34	43	anti-parallel
Strand 3	C	51	61	anti-parallel
Strand 4	C	228	234	anti-parallel
Strand 5	C	97	102	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	75	89	anti-parallel
Strand 3	C	164	171	anti-parallel
Strand 4	C	153	158	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	75	89	anti-parallel
Strand 3	C	242	260	anti-parallel
Strand 4	C	265	285	anti-parallel
Strand 5	C	290	292	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	176	first strand
Strand 2	C	179	182	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	29	first strand
Strand 2	D	34	43	anti-parallel
Strand 3	D	51	61	anti-parallel
Strand 4	D	228	234	anti-parallel
Strand 5	D	97	102	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	75	89	anti-parallel
Strand 3	D	164	171	anti-parallel
Strand 4	D	153	158	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	75	89	anti-parallel
Strand 3	D	242	260	anti-parallel
Strand 4	D	265	285	anti-parallel
Strand 5	D	290	292	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	179	182	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	29	first strand
Strand 2	E	34	43	anti-parallel
Strand 3	E	51	61	anti-parallel
Strand 4	E	228	234	anti-parallel
Strand 5	E	97	102	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	70	first strand
Strand 2	E	75	89	anti-parallel
Strand 3	E	164	171	anti-parallel
Strand 4	E	153	158	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	70	first strand
Strand 2	E	75	89	anti-parallel
Strand 3	E	242	260	anti-parallel
Strand 4	E	265	285	anti-parallel
Strand 5	E	290	292	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	176	first strand
Strand 2	E	179	182	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	29	first strand
Strand 2	F	34	43	anti-parallel
Strand 3	F	51	61	anti-parallel
Strand 4	F	228	234	anti-parallel
Strand 5	F	97	102	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	70	first strand
Strand 2	F	75	89	anti-parallel
Strand 3	F	164	171	anti-parallel
Strand 4	F	153	158	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	70	first strand
Strand 2	F	75	89	anti-parallel
Strand 3	F	242	260	anti-parallel
Strand 4	F	265	285	anti-parallel
Strand 5	F	290	292	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	176	first strand
Strand 2	F	179	182	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	29	first strand
Strand 2	G	34	43	anti-parallel
Strand 3	G	51	61	anti-parallel
Strand 4	G	228	234	anti-parallel
Strand 5	G	97	102	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	70	first strand
Strand 2	G	75	89	anti-parallel
Strand 3	G	164	171	anti-parallel
Strand 4	G	153	158	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	70	first strand
Strand 2	G	75	89	anti-parallel
Strand 3	G	242	260	anti-parallel
Strand 4	G	265	285	anti-parallel
Strand 5	G	290	292	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	176	first strand
Strand 2	G	179	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U4P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U4P