Analysis of interatomic Contacts of Structural Units in PDB entry:
6U4Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U4Y entry

There are 6 chains in PDB entry 6U4Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 12	GLU 249
B	PRO 12	GLU 249
C	ARG 16	GLU 249
D	GLY 76	ARG 441
E	GLY 76	LEU 440
F	SER 77	PRO 95

There are 30 helices in PDB entry 6U4Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	61	Right-handed alpha
Helix 2	AA2	A	144	152	Right-handed alpha
Helix 3	AA3	A	167	180	Right-handed alpha
Helix 4	AA4	A	222	231	Right-handed alpha
Helix 5	AA5	A	232	235	Right-handed 310
Helix 6	AA6	A	238	249	Right-handed alpha
Helix 7	AA7	B	13	61	Right-handed alpha
Helix 8	AA8	B	144	152	Right-handed alpha
Helix 9	AA9	B	167	179	Right-handed alpha
Helix 10	AB1	B	220	231	Right-handed alpha
Helix 11	AB2	B	232	235	Right-handed 310
Helix 12	AB3	B	236	248	Right-handed alpha
Helix 13	AB4	C	17	62	Right-handed alpha
Helix 14	AB5	C	145	152	Right-handed alpha
Helix 15	AB6	C	167	179	Right-handed alpha
Helix 16	AB7	C	221	231	Right-handed alpha
Helix 17	AB8	C	232	235	Right-handed 310
Helix 18	AB9	C	236	249	Right-handed alpha
Helix 19	AC1	D	128	130	Right-handed 310
Helix 20	AC2	D	267	279	Right-handed alpha
Helix 21	AC3	D	339	343	Right-handed 310
Helix 22	AC4	D	395	399	Right-handed 310
Helix 23	AC5	E	128	130	Right-handed 310
Helix 24	AC6	E	267	279	Right-handed alpha
Helix 25	AC7	E	339	343	Right-handed 310
Helix 26	AC8	E	395	399	Right-handed 310
Helix 27	AC9	F	128	130	Right-handed 310
Helix 28	AD1	F	267	280	Right-handed alpha
Helix 29	AD2	F	339	343	Right-handed 310
Helix 30	AD3	F	395	399	Right-handed 310

There are 22 sheets in PDB entry 6U4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	82	87	anti-parallel
Strand 3	D	82	90	anti-parallel
Strand 4	D	433	439	anti-parallel
Strand 5	D	424	429	anti-parallel
Strand 6	D	413	418	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	D	132	140	parallel
Strand 3	D	120	126	anti-parallel
Strand 4	D	112	117	anti-parallel
Strand 5	D	96	101	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	82	87	anti-parallel
Strand 3	E	82	90	anti-parallel
Strand 4	E	433	439	anti-parallel
Strand 5	E	424	429	anti-parallel
Strand 6	E	413	418	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	E	132	140	parallel
Strand 3	E	120	126	anti-parallel
Strand 4	E	112	117	anti-parallel
Strand 5	E	96	101	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	118	119	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	82	87	anti-parallel
Strand 3	F	82	90	anti-parallel
Strand 4	F	433	439	anti-parallel
Strand 5	F	424	429	anti-parallel
Strand 6	F	413	418	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	F	132	140	parallel
Strand 3	F	120	126	anti-parallel
Strand 4	F	112	117	anti-parallel
Strand 5	F	96	101	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	154	first strand
Strand 2	D	161	167	anti-parallel
Strand 3	D	172	176	anti-parallel
Strand 4	D	181	186	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	198	first strand
Strand 2	D	205	210	anti-parallel
Strand 3	D	215	219	anti-parallel
Strand 4	D	224	229	anti-parallel
Strand 5	D	292	294	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	244	first strand
Strand 2	D	250	255	anti-parallel
Strand 3	D	260	264	anti-parallel
Strand 4	D	299	301	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	315	first strand
Strand 2	D	318	322	anti-parallel
Strand 3	D	327	333	anti-parallel
Strand 4	D	350	357	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	376	380	anti-parallel
Strand 3	D	386	390	anti-parallel
Strand 4	D	402	404	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	154	first strand
Strand 2	E	161	167	anti-parallel
Strand 3	E	171	176	anti-parallel
Strand 4	E	181	187	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	198	first strand
Strand 2	E	205	210	anti-parallel
Strand 3	E	215	219	anti-parallel
Strand 4	E	224	229	anti-parallel
Strand 5	E	292	294	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	244	first strand
Strand 2	E	250	255	anti-parallel
Strand 3	E	260	264	anti-parallel
Strand 4	E	299	301	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	315	first strand
Strand 2	E	318	322	anti-parallel
Strand 3	E	327	333	anti-parallel
Strand 4	E	350	357	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	370	first strand
Strand 2	E	376	380	anti-parallel
Strand 3	E	386	390	anti-parallel
Strand 4	E	402	404	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	154	first strand
Strand 2	F	161	167	anti-parallel
Strand 3	F	172	176	anti-parallel
Strand 4	F	181	186	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	193	198	first strand
Strand 2	F	205	210	anti-parallel
Strand 3	F	215	219	anti-parallel
Strand 4	F	224	229	anti-parallel
Strand 5	F	292	294	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	244	first strand
Strand 2	F	250	255	anti-parallel
Strand 3	F	260	264	anti-parallel
Strand 4	F	299	301	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	311	315	first strand
Strand 2	F	318	323	anti-parallel
Strand 3	F	327	333	anti-parallel
Strand 4	F	350	357	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	369	370	first strand
Strand 2	F	376	380	anti-parallel
Strand 3	F	386	390	anti-parallel
Strand 4	F	402	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U4Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U4Y