Analysis of interatomic Contacts of Structural Units in PDB entry:
6U4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U4Z entry

There is 1 chain in PDB entry 6U4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 50SER 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6U4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 92Right-handed 310
Helix 2
AA2
A
105 107Right-handed 310
Helix 3
AA3
A
131 135Right-handed 310
Helix 4
AA4
A
148 152Right-handed 310
Helix 5
AA5
A
153 170Right-handed alpha
Helix 6
AA6
A
187 192Right-handed 310
Helix 7
AA7
A
194 212Right-handed alpha
Helix 8
AA8
A
217 234Right-handed alpha
Helix 9
AA9
A
257 275Right-handed alpha
Helix 10
AB1
A
276 293Right-handed alpha
Helix 11
AB2
A
297 301Right-handed 310
Helix 12
AB3
A
317 335Right-handed alpha
Helix 13
AB4
A
336 354Right-handed alpha
Helix 14
AB5
A
384 403Right-handed alpha
Helix 15
AB6
A
404 422Right-handed alpha
Helix 16
AB7
A
442 461Right-handed alpha
Helix 17
AB8
A
463 479Right-handed alpha
Helix 18
AB9
A
504 522Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6U4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 60first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
110 116anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
81 88anti-parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
140 146anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
502 503anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
242 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
306 308anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
372 380anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 428first strand
Strand 2
A
433 438anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il