Analysis of interatomic Contacts of Structural Units in PDB entry:
6U59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U59 entry

There are 12 chains in PDB entry 6U59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 31	ARG 504
B	ALA 525	ASP 664
L	ASP 1	LYS 107
H	LEU 4	SER 112
C	ALA 31	ARG 504
D	ALA 525	ASP 664
E	ASP 1	LYS 107
F	LEU 4	SER 112
G	ALA 31	ARG 504
I	ALA 525	ASP 664
J	ASP 1	LYS 107
K	LEU 4	SER 112

There are 48 helices in PDB entry 6U59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	116	Right-handed alpha
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	177	179	Right-handed 310
Helix 4	AA4	A	335	353	Right-handed alpha
Helix 5	AA5	A	387	391	Right-handed 310
Helix 6	AA6	A	475	484	Right-handed alpha
Helix 7	AA7	B	526	530	Right-handed alpha
Helix 8	AA8	B	538	543	Right-handed alpha
Helix 9	AA9	B	569	597	Right-handed alpha
Helix 10	AB1	B	618	623	Right-handed alpha
Helix 11	AB2	B	627	635	Right-handed alpha
Helix 12	AB3	B	638	648	Right-handed alpha
Helix 13	AB4	B	651	662	Right-handed alpha
Helix 14	AB5	L	29	31	Right-handed 310
Helix 15	AB6	L	79	83	Right-handed 310
Helix 16	AB7	H	83	87	Right-handed 310
Helix 17	AB8	C	98	116	Right-handed alpha
Helix 18	AB9	C	122	126	Right-handed 310
Helix 19	AC1	C	177	179	Right-handed 310
Helix 20	AC2	C	335	353	Right-handed alpha
Helix 21	AC3	C	387	391	Right-handed 310
Helix 22	AC4	C	475	484	Right-handed alpha
Helix 23	AC5	D	526	530	Right-handed alpha
Helix 24	AC6	D	538	543	Right-handed alpha
Helix 25	AC7	D	569	597	Right-handed alpha
Helix 26	AC8	D	618	623	Right-handed alpha
Helix 27	AC9	D	627	635	Right-handed alpha
Helix 28	AD1	D	638	648	Right-handed alpha
Helix 29	AD2	D	651	662	Right-handed alpha
Helix 30	AD3	E	29	31	Right-handed 310
Helix 31	AD4	E	79	83	Right-handed 310
Helix 32	AD5	F	83	87	Right-handed 310
Helix 33	AD6	G	98	116	Right-handed alpha
Helix 34	AD7	G	122	126	Right-handed 310
Helix 35	AD8	G	177	179	Right-handed 310
Helix 36	AD9	G	335	353	Right-handed alpha
Helix 37	AE1	G	387	391	Right-handed 310
Helix 38	AE2	G	475	484	Right-handed alpha
Helix 39	AE3	I	526	530	Right-handed alpha
Helix 40	AE4	I	538	543	Right-handed alpha
Helix 41	AE5	I	569	597	Right-handed alpha
Helix 42	AE6	I	618	623	Right-handed alpha
Helix 43	AE7	I	627	635	Right-handed alpha
Helix 44	AE8	I	638	648	Right-handed alpha
Helix 45	AE9	I	651	662	Right-handed alpha
Helix 46	AF1	J	29	31	Right-handed 310
Helix 47	AF2	J	79	83	Right-handed 310
Helix 48	AF3	K	83	87	Right-handed 310

There are 45 sheets in PDB entry 6U59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	604	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	215	218	anti-parallel
Strand 4	A	247	251	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	176	first strand
Strand 2	A	155	162	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	456	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	329	334	anti-parallel
Strand 5	A	413	421	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	456	anti-parallel
Strand 4	A	465	469	anti-parallel
Strand 5	A	357	361	parallel
Strand 6	A	394	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	308	first strand
Strand 2	A	316	323	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	63	67	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	50	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	100	101	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	76	81	anti-parallel
Strand 3	H	67	73	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	D	603	604	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	53	56	parallel
Strand 3	C	215	218	anti-parallel
Strand 4	C	247	251	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	176	first strand
Strand 2	C	155	162	anti-parallel
Strand 3	C	129	132	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	433	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	443	456	anti-parallel
Strand 3	C	284	298	anti-parallel
Strand 4	C	329	334	anti-parallel
Strand 5	C	413	421	anti-parallel
Strand 6	C	381	385	anti-parallel
Strand 7	C	374	378	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	298	anti-parallel
Strand 3	C	443	456	anti-parallel
Strand 4	C	465	469	anti-parallel
Strand 5	C	357	361	parallel
Strand 6	C	394	395	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	308	first strand
Strand 2	C	316	323	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	63	67	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	102	107	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	50	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	102	107	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	100	101	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	76	81	anti-parallel
Strand 3	F	67	73	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	I	603	604	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	85	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	215	218	anti-parallel
Strand 4	G	247	251	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	176	first strand
Strand 2	G	155	162	anti-parallel
Strand 3	G	129	132	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	203	first strand
Strand 2	G	433	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	456	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	329	334	anti-parallel
Strand 5	G	413	421	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	374	378	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	298	anti-parallel
Strand 3	G	443	456	anti-parallel
Strand 4	G	465	469	anti-parallel
Strand 5	G	357	361	parallel
Strand 6	G	394	395	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	308	first strand
Strand 2	G	316	323	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	63	67	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	14	first strand
Strand 2	J	102	107	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	33	38	anti-parallel
Strand 5	J	45	50	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	14	first strand
Strand 2	J	102	107	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	97	98	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	96	anti-parallel
Strand 4	K	32	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	57	59	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	96	anti-parallel
Strand 4	K	100	101	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	23	first strand
Strand 2	K	76	81	anti-parallel
Strand 3	K	67	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U59

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U59