Analysis of interatomic Contacts of Structural Units in PDB entry:
6U5O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U5O entry

There are 5 chains in PDB entry 6U5O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	THR 8	THR 1380
P	SER 169	SER 266
Q	SER 171	GLU 236
R	SER 168	ILE 219
S	SER 169	ALA 231

There are 77 helices in PDB entry 6U5O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	24	36	Right-handed alpha
Helix 2	AA2	L	43	52	Right-handed alpha
Helix 3	AA3	L	54	67	Right-handed alpha
Helix 4	AA4	L	77	80	Right-handed 310
Helix 5	AA5	L	81	86	Right-handed alpha
Helix 6	AA6	L	93	120	Right-handed alpha
Helix 7	AA7	L	135	139	Right-handed 310
Helix 8	AA8	L	143	167	Right-handed alpha
Helix 9	AA9	L	207	231	Right-handed alpha
Helix 10	AB1	L	243	261	Right-handed alpha
Helix 11	AB2	L	264	270	Right-handed alpha
Helix 12	AB3	L	270	285	Right-handed alpha
Helix 13	AB4	L	286	316	Right-handed alpha
Helix 14	AB5	L	328	347	Right-handed alpha
Helix 15	AB6	L	352	357	Right-handed alpha
Helix 16	AB7	L	359	364	Right-handed alpha
Helix 17	AB8	L	372	383	Right-handed alpha
Helix 18	AB9	L	390	412	Right-handed alpha
Helix 19	AC1	L	425	435	Right-handed alpha
Helix 20	AC2	L	444	452	Right-handed alpha
Helix 21	AC3	L	467	472	Right-handed alpha
Helix 22	AC4	L	484	488	Right-handed 310
Helix 23	AC5	L	494	505	Right-handed alpha
Helix 24	AC6	L	509	514	Right-handed 310
Helix 25	AC7	L	516	523	Right-handed alpha
Helix 26	AC8	L	530	539	Right-handed alpha
Helix 27	AC9	L	568	586	Right-handed alpha
Helix 28	AD1	L	590	595	Right-handed alpha
Helix 29	AD2	L	599	604	Right-handed alpha
Helix 30	AD3	L	639	643	Right-handed 310
Helix 31	AD4	L	644	660	Right-handed alpha
Helix 32	AD5	L	666	671	Right-handed alpha
Helix 33	AD6	L	672	675	Right-handed 310
Helix 34	AD7	L	715	734	Right-handed alpha
Helix 35	AD8	L	763	784	Right-handed alpha
Helix 36	AD9	L	802	806	Right-handed 310
Helix 37	AE1	L	820	824	Right-handed 310
Helix 38	AE2	L	834	847	Right-handed alpha
Helix 39	AE3	L	847	852	Right-handed alpha
Helix 40	AE4	L	855	872	Right-handed alpha
Helix 41	AE5	L	883	901	Right-handed alpha
Helix 42	AE6	L	907	914	Right-handed alpha
Helix 43	AE7	L	916	920	Right-handed 310
Helix 44	AE8	L	937	953	Right-handed alpha
Helix 45	AE9	L	962	970	Right-handed alpha
Helix 46	AF1	L	979	985	Right-handed alpha
Helix 47	AF2	L	997	1012	Right-handed alpha
Helix 48	AF3	L	1015	1024	Right-handed alpha
Helix 49	AF4	L	1024	1036	Right-handed alpha
Helix 50	AF5	L	1043	1054	Right-handed alpha
Helix 51	AF6	L	1055	1068	Right-handed alpha
Helix 52	AF7	L	1084	1099	Right-handed alpha
Helix 53	AF8	L	1099	1105	Right-handed alpha
Helix 54	AF9	L	1124	1136	Right-handed alpha
Helix 55	AG1	L	1207	1224	Right-handed alpha
Helix 56	AG2	L	1229	1242	Right-handed alpha
Helix 57	AG3	L	1249	1253	Right-handed 310
Helix 58	AG4	L	1260	1265	Right-handed alpha
Helix 59	AG5	L	1279	1284	Right-handed alpha
Helix 60	AG6	L	1290	1292	Right-handed 310
Helix 61	AG7	L	1293	1301	Right-handed alpha
Helix 62	AG8	L	1309	1328	Right-handed alpha
Helix 63	AG9	L	1359	1368	Right-handed alpha
Helix 64	AH1	P	173	193	Right-handed alpha
Helix 65	AH2	P	214	226	Right-handed alpha
Helix 66	AH3	P	227	238	Right-handed alpha
Helix 67	AH4	P	254	264	Right-handed alpha
Helix 68	AH5	Q	173	197	Right-handed alpha
Helix 69	AH6	Q	199	204	Right-handed alpha
Helix 70	AH7	Q	207	213	Right-handed alpha
Helix 71	AH8	Q	217	232	Right-handed alpha
Helix 72	AH9	Q	233	236	Right-handed 310
Helix 73	AI1	R	173	191	Right-handed alpha
Helix 74	AI2	R	200	205	Right-handed alpha
Helix 75	AI3	R	205	218	Right-handed alpha
Helix 76	AI4	S	171	191	Right-handed alpha
Helix 77	AI5	S	205	231	Right-handed alpha

There are 9 sheets in PDB entry 6U5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	1082	1083	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	172	174	first strand
Strand 2	L	179	183	anti-parallel
Strand 3	L	188	192	anti-parallel
Strand 4	L	197	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	387	389	first strand
Strand 2	P	194	196	anti-parallel
Strand 3	P	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	550	551	first strand
Strand 2	L	565	566	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	737	741	first strand
Strand 2	L	748	754	anti-parallel
Strand 3	L	627	632	anti-parallel
Strand 4	L	796	797	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	807	809	first strand
Strand 2	L	812	814	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1154	1157	first strand
Strand 2	L	1334	1338	anti-parallel
Strand 3	L	1166	1170	anti-parallel
Strand 4	L	1286	1289	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1196	1197	first strand
Strand 2	L	1255	1256	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	199	200	first strand
Strand 2	P	207	208	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U5O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U5O