Analysis of interatomic Contacts of Structural Units in PDB entry:
6U5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U5P entry

There are 8 chains in PDB entry 6U5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 115	ALA 336
E	SER 115	ALA 336
B	SER 115	ALA 336
F	SER 115	ALA 336
C	SER 115	ALA 336
G	SER 115	ALA 336
D	SER 115	ALA 336
H	SER 115	ALA 336

There are 84 helices in PDB entry 6U5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	124	134	Right-handed alpha
Helix 2	AA2	A	148	156	Right-handed alpha
Helix 3	AA3	A	166	173	Right-handed alpha
Helix 4	AA4	A	187	202	Right-handed alpha
Helix 5	AA5	A	213	215	Right-handed 310
Helix 6	AA6	A	216	224	Right-handed alpha
Helix 7	AA7	A	230	241	Right-handed alpha
Helix 8	AA8	A	246	256	Right-handed alpha
Helix 9	AA9	A	279	284	Right-handed alpha
Helix 10	AB1	A	284	290	Right-handed alpha
Helix 11	AB2	A	323	334	Right-handed alpha
Helix 12	AB3	E	124	133	Right-handed alpha
Helix 13	AB4	E	148	155	Right-handed alpha
Helix 14	AB5	E	166	173	Right-handed alpha
Helix 15	AB6	E	187	202	Right-handed alpha
Helix 16	AB7	E	216	224	Right-handed alpha
Helix 17	AB8	E	230	240	Right-handed alpha
Helix 18	AB9	E	246	256	Right-handed alpha
Helix 19	AC1	E	279	284	Right-handed alpha
Helix 20	AC2	E	284	289	Right-handed alpha
Helix 21	AC3	E	323	334	Right-handed alpha
Helix 22	AC4	B	124	134	Right-handed alpha
Helix 23	AC5	B	145	147	Right-handed 310
Helix 24	AC6	B	148	156	Right-handed alpha
Helix 25	AC7	B	166	173	Right-handed alpha
Helix 26	AC8	B	187	202	Right-handed alpha
Helix 27	AC9	B	216	224	Right-handed alpha
Helix 28	AD1	B	230	242	Right-handed alpha
Helix 29	AD2	B	246	256	Right-handed alpha
Helix 30	AD3	B	279	284	Right-handed alpha
Helix 31	AD4	B	284	289	Right-handed alpha
Helix 32	AD5	B	323	334	Right-handed alpha
Helix 33	AD6	F	124	133	Right-handed alpha
Helix 34	AD7	F	148	154	Right-handed alpha
Helix 35	AD8	F	166	173	Right-handed alpha
Helix 36	AD9	F	187	202	Right-handed alpha
Helix 37	AE1	F	216	224	Right-handed alpha
Helix 38	AE2	F	230	241	Right-handed alpha
Helix 39	AE3	F	246	256	Right-handed alpha
Helix 40	AE4	F	279	284	Right-handed alpha
Helix 41	AE5	F	284	289	Right-handed alpha
Helix 42	AE6	F	323	334	Right-handed alpha
Helix 43	AE7	C	124	134	Right-handed alpha
Helix 44	AE8	C	148	156	Right-handed alpha
Helix 45	AE9	C	166	173	Right-handed alpha
Helix 46	AF1	C	187	202	Right-handed alpha
Helix 47	AF2	C	213	215	Right-handed 310
Helix 48	AF3	C	216	224	Right-handed alpha
Helix 49	AF4	C	230	241	Right-handed alpha
Helix 50	AF5	C	246	256	Right-handed alpha
Helix 51	AF6	C	279	284	Right-handed alpha
Helix 52	AF7	C	284	290	Right-handed alpha
Helix 53	AF8	C	323	334	Right-handed alpha
Helix 54	AF9	G	124	133	Right-handed alpha
Helix 55	AG1	G	148	155	Right-handed alpha
Helix 56	AG2	G	166	173	Right-handed alpha
Helix 57	AG3	G	187	202	Right-handed alpha
Helix 58	AG4	G	216	224	Right-handed alpha
Helix 59	AG5	G	230	240	Right-handed alpha
Helix 60	AG6	G	246	256	Right-handed alpha
Helix 61	AG7	G	279	284	Right-handed alpha
Helix 62	AG8	G	284	289	Right-handed alpha
Helix 63	AG9	G	323	334	Right-handed alpha
Helix 64	AH1	D	124	134	Right-handed alpha
Helix 65	AH2	D	145	147	Right-handed 310
Helix 66	AH3	D	148	156	Right-handed alpha
Helix 67	AH4	D	166	173	Right-handed alpha
Helix 68	AH5	D	187	202	Right-handed alpha
Helix 69	AH6	D	216	224	Right-handed alpha
Helix 70	AH7	D	230	242	Right-handed alpha
Helix 71	AH8	D	246	256	Right-handed alpha
Helix 72	AH9	D	279	284	Right-handed alpha
Helix 73	AI1	D	284	289	Right-handed alpha
Helix 74	AI2	D	323	334	Right-handed alpha
Helix 75	AI3	H	124	133	Right-handed alpha
Helix 76	AI4	H	148	154	Right-handed alpha
Helix 77	AI5	H	166	173	Right-handed alpha
Helix 78	AI6	H	187	202	Right-handed alpha
Helix 79	AI7	H	216	224	Right-handed alpha
Helix 80	AI8	H	230	241	Right-handed alpha
Helix 81	AI9	H	246	256	Right-handed alpha
Helix 82	AJ1	H	279	284	Right-handed alpha
Helix 83	AJ2	H	284	289	Right-handed alpha
Helix 84	AJ3	H	323	334	Right-handed alpha

There are 16 sheets in PDB entry 6U5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	139	143	parallel
Strand 3	A	118	121	parallel
Strand 4	A	180	183	parallel
Strand 5	A	207	210	parallel
Strand 6	A	227	229	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	139	143	parallel
Strand 3	E	118	121	parallel
Strand 4	E	180	183	parallel
Strand 5	E	207	210	parallel
Strand 6	E	227	229	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	268	first strand
Strand 2	E	317	322	anti-parallel
Strand 3	E	292	298	anti-parallel
Strand 4	E	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	139	143	parallel
Strand 3	B	117	121	parallel
Strand 4	B	178	183	parallel
Strand 5	B	207	210	parallel
Strand 6	B	227	229	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	317	322	anti-parallel
Strand 3	B	292	298	anti-parallel
Strand 4	B	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	139	143	parallel
Strand 3	F	118	121	parallel
Strand 4	F	180	183	parallel
Strand 5	F	206	209	parallel
Strand 6	F	227	228	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	268	first strand
Strand 2	F	317	322	anti-parallel
Strand 3	F	292	298	anti-parallel
Strand 4	F	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	139	143	parallel
Strand 3	C	118	121	parallel
Strand 4	C	180	183	parallel
Strand 5	C	207	210	parallel
Strand 6	C	227	229	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	268	first strand
Strand 2	C	317	322	anti-parallel
Strand 3	C	292	298	anti-parallel
Strand 4	C	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	139	143	parallel
Strand 3	G	118	121	parallel
Strand 4	G	180	183	parallel
Strand 5	G	207	210	parallel
Strand 6	G	227	229	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	268	first strand
Strand 2	G	317	322	anti-parallel
Strand 3	G	292	298	anti-parallel
Strand 4	G	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	139	143	parallel
Strand 3	D	117	121	parallel
Strand 4	D	178	183	parallel
Strand 5	D	207	210	parallel
Strand 6	D	227	229	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	268	first strand
Strand 2	D	317	322	anti-parallel
Strand 3	D	292	298	anti-parallel
Strand 4	D	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	139	143	parallel
Strand 3	H	118	121	parallel
Strand 4	H	180	183	parallel
Strand 5	H	206	209	parallel
Strand 6	H	227	228	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	263	268	first strand
Strand 2	H	317	322	anti-parallel
Strand 3	H	292	298	anti-parallel
Strand 4	H	301	304	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U5P