Analysis of interatomic Contacts of Structural Units in PDB entry:
6U5S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U5S entry

There are 2 chains in PDB entry 6U5S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	THR 385
B	ASN 10	PHE 347

There are 42 helices in PDB entry 6U5S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	36	Right-handed alpha
Helix 2	AA2	A	54	68	Right-handed alpha
Helix 3	AA3	A	81	93	Right-handed alpha
Helix 4	AA4	A	117	128	Right-handed alpha
Helix 5	AA5	A	143	155	Right-handed alpha
Helix 6	AA6	A	172	185	Right-handed alpha
Helix 7	AA7	A	186	188	Right-handed 310
Helix 8	AA8	A	197	212	Right-handed alpha
Helix 9	AA9	A	252	264	Right-handed alpha
Helix 10	AB1	A	279	301	Right-handed alpha
Helix 11	AB2	A	323	334	Right-handed alpha
Helix 12	AB3	B	22	37	Right-handed alpha
Helix 13	AB4	B	54	68	Right-handed alpha
Helix 14	AB5	B	81	93	Right-handed alpha
Helix 15	AB6	B	117	129	Right-handed alpha
Helix 16	AB7	B	143	157	Right-handed alpha
Helix 17	AB8	B	172	187	Right-handed alpha
Helix 18	AB9	B	197	212	Right-handed alpha
Helix 19	AC1	B	252	264	Right-handed alpha
Helix 20	AC2	B	279	302	Right-handed alpha
Helix 21	AC3	B	324	335	Right-handed alpha
Helix 22	AC4	C	22	36	Right-handed alpha
Helix 23	AC5	C	54	68	Right-handed alpha
Helix 24	AC6	C	81	93	Right-handed alpha
Helix 25	AC7	C	117	128	Right-handed alpha
Helix 26	AC8	C	143	155	Right-handed alpha
Helix 27	AC9	C	172	185	Right-handed alpha
Helix 28	AD1	C	186	188	Right-handed 310
Helix 29	AD2	C	197	212	Right-handed alpha
Helix 30	AD3	C	252	264	Right-handed alpha
Helix 31	AD4	C	279	301	Right-handed alpha
Helix 32	AD5	C	323	334	Right-handed alpha
Helix 33	AD6	D	22	37	Right-handed alpha
Helix 34	AD7	D	54	68	Right-handed alpha
Helix 35	AD8	D	81	93	Right-handed alpha
Helix 36	AD9	D	117	129	Right-handed alpha
Helix 37	AE1	D	143	157	Right-handed alpha
Helix 38	AE2	D	172	187	Right-handed alpha
Helix 39	AE3	D	197	212	Right-handed alpha
Helix 40	AE4	D	252	264	Right-handed alpha
Helix 41	AE5	D	279	302	Right-handed alpha
Helix 42	AE6	D	324	335	Right-handed alpha

There are 18 sheets in PDB entry 6U5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	47	first strand
Strand 2	A	11	17	parallel
Strand 3	A	72	75	parallel
Strand 4	A	95	98	parallel
Strand 5	A	110	112	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	135	137	parallel
Strand 3	A	191	195	parallel
Strand 4	A	219	222	parallel
Strand 5	A	241	246	parallel
Strand 6	A	359	364	anti-parallel
Strand 7	A	367	372	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	344	347	anti-parallel
Strand 3	A	353	354	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	42	44	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	15	18	parallel
Strand 3	B	73	75	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	111	112	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	135	137	parallel
Strand 3	B	194	195	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	241	246	parallel
Strand 3	B	357	363	anti-parallel
Strand 4	B	368	375	anti-parallel
Strand 5	B	381	382	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	344	347	anti-parallel
Strand 3	B	353	354	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	47	first strand
Strand 2	C	11	17	parallel
Strand 3	C	72	75	parallel
Strand 4	C	95	98	parallel
Strand 5	C	110	112	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	135	137	parallel
Strand 3	C	191	195	parallel
Strand 4	C	219	222	parallel
Strand 5	C	241	246	parallel
Strand 6	C	359	364	anti-parallel
Strand 7	C	367	372	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	344	347	anti-parallel
Strand 3	C	353	354	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	42	44	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	49	first strand
Strand 2	D	15	18	parallel
Strand 3	D	73	75	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	111	112	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	164	first strand
Strand 2	D	135	137	parallel
Strand 3	D	194	195	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	241	246	parallel
Strand 3	D	357	363	anti-parallel
Strand 4	D	368	375	anti-parallel
Strand 5	D	381	382	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	339	first strand
Strand 2	D	344	347	anti-parallel
Strand 3	D	353	354	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U5S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U5S