Analysis of interatomic Contacts of Structural Units in PDB entry:
6U5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U5U entry

There are 2 chains in PDB entry 6U5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1747
G	SER 5	GLN 2050

There are169 helices in PDB entry 6U5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	22	Right-handed alpha
Helix 2	AA2	A	27	38	Right-handed alpha
Helix 3	AA3	A	51	65	Right-handed alpha
Helix 4	AA4	A	67	72	Right-handed alpha
Helix 5	AA5	A	84	90	Right-handed alpha
Helix 6	AA6	A	146	158	Right-handed alpha
Helix 7	AA7	A	162	166	Right-handed 310
Helix 8	AA8	A	171	177	Right-handed alpha
Helix 9	AA9	A	179	193	Right-handed alpha
Helix 10	AB1	A	205	217	Right-handed alpha
Helix 11	AB2	A	222	236	Right-handed alpha
Helix 12	AB3	A	242	253	Right-handed alpha
Helix 13	AB4	A	257	271	Right-handed alpha
Helix 14	AB5	A	279	299	Right-handed alpha
Helix 15	AB6	A	329	351	Right-handed alpha
Helix 16	AB7	A	355	382	Right-handed alpha
Helix 17	AB8	A	385	390	Right-handed alpha
Helix 18	AB9	A	395	399	Right-handed 310
Helix 19	AC1	A	404	421	Right-handed alpha
Helix 20	AC2	A	429	442	Right-handed alpha
Helix 21	AC3	A	444	457	Right-handed alpha
Helix 22	AC4	A	459	462	Right-handed 310
Helix 23	AC5	A	463	483	Right-handed alpha
Helix 24	AC6	A	522	531	Right-handed alpha
Helix 25	AC7	A	608	614	Right-handed alpha
Helix 26	AC8	A	654	669	Right-handed alpha
Helix 27	AC9	A	689	699	Right-handed alpha
Helix 28	AD1	A	711	725	Right-handed alpha
Helix 29	AD2	A	741	753	Right-handed alpha
Helix 30	AD3	A	780	784	Right-handed 310
Helix 31	AD4	A	785	796	Right-handed alpha
Helix 32	AD5	A	798	804	Right-handed alpha
Helix 33	AD6	A	806	814	Right-handed alpha
Helix 34	AD7	A	839	844	Right-handed alpha
Helix 35	AD8	A	846	850	Right-handed 310
Helix 36	AD9	A	884	889	Right-handed alpha
Helix 37	AE1	A	890	892	Right-handed 310
Helix 38	AE2	A	897	908	Right-handed alpha
Helix 39	AE3	A	910	920	Right-handed alpha
Helix 40	AE4	A	935	965	Right-handed alpha
Helix 41	AE5	A	970	975	Right-handed alpha
Helix 42	AE6	A	997	1005	Right-handed alpha
Helix 43	AE7	A	1006	1010	Right-handed 310
Helix 44	AE8	A	1036	1042	Right-handed alpha
Helix 45	AE9	A	1046	1056	Right-handed alpha
Helix 46	AF1	A	1088	1093	Right-handed alpha
Helix 47	AF2	A	1093	1100	Right-handed alpha
Helix 48	AF3	A	1107	1112	Right-handed 310
Helix 49	AF4	A	1194	1199	Right-handed 310
Helix 50	AF5	A	1201	1208	Right-handed alpha
Helix 51	AF6	A	1209	1225	Right-handed alpha
Helix 52	AF7	A	1230	1232	Right-handed 310
Helix 53	AF8	A	1233	1238	Right-handed alpha
Helix 54	AF9	A	1239	1243	Right-handed 310
Helix 55	AG1	A	1253	1261	Right-handed alpha
Helix 56	AG2	A	1263	1267	Right-handed 310
Helix 57	AG3	A	1273	1278	Right-handed alpha
Helix 58	AG4	A	1284	1291	Right-handed alpha
Helix 59	AG5	A	1306	1321	Right-handed alpha
Helix 60	AG6	A	1336	1346	Right-handed alpha
Helix 61	AG7	A	1352	1356	Right-handed 310
Helix 62	AG8	A	1361	1365	Right-handed 310
Helix 63	AG9	A	1389	1397	Right-handed alpha
Helix 64	AH1	A	1423	1430	Right-handed 310
Helix 65	AH2	A	1440	1443	Right-handed 310
Helix 66	AH3	A	1444	1475	Right-handed alpha
Helix 67	AH4	A	1481	1509	Right-handed alpha
Helix 68	AH5	A	1520	1527	Right-handed alpha
Helix 69	AH6	A	1528	1530	Right-handed 310
Helix 70	AH7	A	1532	1536	Right-handed 310
Helix 71	AH8	A	1548	1564	Right-handed alpha
Helix 72	AH9	A	1577	1582	Right-handed alpha
Helix 73	AI1	A	1587	1603	Right-handed alpha
Helix 74	AI2	A	1615	1619	Right-handed 310
Helix 75	AI3	A	1645	1649	Right-handed 310
Helix 76	AI4	A	1658	1665	Right-handed 310
Helix 77	AI5	A	1666	1695	Right-handed alpha
Helix 78	AI6	A	1707	1716	Right-handed alpha
Helix 79	AI7	A	1734	1738	Right-handed 310
Helix 80	AI8	G	24	41	Right-handed alpha
Helix 81	AI9	G	56	71	Right-handed alpha
Helix 82	AJ1	G	80	95	Right-handed alpha
Helix 83	AJ2	G	100	111	Right-handed alpha
Helix 84	AJ3	G	115	133	Right-handed alpha
Helix 85	AJ4	G	143	152	Right-handed alpha
Helix 86	AJ5	G	170	179	Right-handed alpha
Helix 87	AJ6	G	180	202	Right-handed alpha
Helix 88	AJ7	G	215	221	Right-handed alpha
Helix 89	AJ8	G	222	225	Right-handed 310
Helix 90	AJ9	G	227	232	Right-handed alpha
Helix 91	AK1	G	233	256	Right-handed alpha
Helix 92	AK2	G	259	267	Right-handed alpha
Helix 93	AK3	G	276	284	Right-handed alpha
Helix 94	AK4	G	291	312	Right-handed alpha
Helix 95	AK5	G	320	325	Right-handed alpha
Helix 96	AK6	G	345	358	Right-handed alpha
Helix 97	AK7	G	361	365	Right-handed 310
Helix 98	AK8	G	382	395	Right-handed alpha
Helix 99	AK9	G	403	407	Right-handed 310
Helix 100	AL1	G	408	412	Right-handed 310
Helix 101	AL2	G	432	434	Right-handed 310
Helix 102	AL3	G	435	446	Right-handed alpha
Helix 103	AL4	G	474	485	Right-handed alpha
Helix 104	AL5	G	507	510	Right-handed 310
Helix 105	AL6	G	511	520	Right-handed alpha
Helix 106	AL7	G	543	549	Right-handed alpha
Helix 107	AL8	G	560	565	Right-handed alpha
Helix 108	AL9	G	583	588	Right-handed alpha
Helix 109	AM1	G	605	613	Right-handed alpha
Helix 110	AM2	G	622	624	Right-handed 310
Helix 111	AM3	G	627	639	Right-handed alpha
Helix 112	AM4	G	655	672	Right-handed alpha
Helix 113	AM5	G	689	694	Right-handed alpha
Helix 114	AM6	G	710	723	Right-handed alpha
Helix 115	AM7	G	746	759	Right-handed alpha
Helix 116	AM8	G	773	783	Right-handed alpha
Helix 117	AM9	G	784	787	Right-handed 310
Helix 118	AN1	G	814	824	Right-handed alpha
Helix 119	AN2	G	828	836	Right-handed 310
Helix 120	AN3	G	859	872	Right-handed alpha
Helix 121	AN4	G	879	887	Right-handed alpha
Helix 122	AN5	G	887	898	Right-handed alpha
Helix 123	AN6	G	913	917	Right-handed 310
Helix 124	AN7	G	918	930	Right-handed alpha
Helix 125	AN8	G	940	959	Right-handed alpha
Helix 126	AN9	G	969	974	Right-handed 310
Helix 127	AO1	G	975	985	Right-handed alpha
Helix 128	AO2	G	987	992	Right-handed 310
Helix 129	AO3	G	997	1006	Right-handed alpha
Helix 130	AO4	G	1024	1031	Right-handed alpha
Helix 131	AO5	G	1034	1043	Right-handed 310
Helix 132	AO6	G	1047	1051	Right-handed 310
Helix 133	AO7	G	1058	1063	Right-handed 310
Helix 134	AO8	G	1069	1090	Right-handed alpha
Helix 135	AO9	G	1093	1097	Right-handed 310
Helix 136	AP1	G	1134	1144	Right-handed alpha
Helix 137	AP2	G	1148	1156	Right-handed alpha
Helix 138	AP3	G	1168	1174	Right-handed alpha
Helix 139	AP4	G	1214	1216	Right-handed 310
Helix 140	AP5	G	1257	1271	Right-handed alpha
Helix 141	AP6	G	1293	1304	Right-handed alpha
Helix 142	AP7	G	1324	1335	Right-handed alpha
Helix 143	AP8	G	1336	1338	Right-handed 310
Helix 144	AP9	G	1346	1350	Right-handed 310
Helix 145	AQ1	G	1418	1421	Right-handed 310
Helix 146	AQ2	G	1439	1446	Right-handed alpha
Helix 147	AQ3	G	1514	1522	Right-handed alpha
Helix 148	AQ4	G	1550	1557	Right-handed alpha
Helix 149	AQ5	G	1581	1595	Right-handed alpha
Helix 150	AQ6	G	1601	1603	Right-handed 310
Helix 151	AQ7	G	1679	1683	Right-handed 310
Helix 152	AQ8	G	1684	1702	Right-handed alpha
Helix 153	AQ9	G	1706	1712	Right-handed alpha
Helix 154	AR1	G	1723	1735	Right-handed alpha
Helix 155	AR2	G	1769	1772	Right-handed 310
Helix 156	AR3	G	1773	1795	Right-handed alpha
Helix 157	AR4	G	1809	1819	Right-handed alpha
Helix 158	AR5	G	1823	1841	Right-handed alpha
Helix 159	AR6	G	1858	1863	Right-handed alpha
Helix 160	AR7	G	1867	1883	Right-handed alpha
Helix 161	AR8	G	1904	1921	Right-handed alpha
Helix 162	AR9	G	1923	1931	Right-handed alpha
Helix 163	AS1	G	1934	1952	Right-handed alpha
Helix 164	AS2	G	1978	1984	Right-handed 310
Helix 165	AS3	G	1985	1996	Right-handed alpha
Helix 166	AS4	G	2002	2006	Right-handed 310
Helix 167	AS5	G	2022	2034	Right-handed alpha
Helix 168	AS6	G	2035	2043	Right-handed alpha
Helix 169	AS7	G	2044	2049	Right-handed 310

There are 33 sheets in PDB entry 6U5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	43	47	parallel
Strand 3	G	1662	1666	parallel
Strand 4	G	1803	1806	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	731	736	anti-parallel
Strand 3	A	702	707	parallel
Strand 4	A	677	681	parallel
Strand 5	A	767	770	parallel
Strand 6	A	820	822	parallel
Strand 7	A	862	864	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	671	672	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	503	first strand
Strand 2	A	509	515	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	651	first strand
Strand 2	A	639	643	anti-parallel
Strand 3	A	924	925	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	981	982	first strand
Strand 2	G	963	964	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1020	1021	first strand
Strand 2	A	1381	1388	anti-parallel
Strand 3	A	1025	1027	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1020	1021	first strand
Strand 2	A	1381	1388	anti-parallel
Strand 3	A	1326	1333	anti-parallel
Strand 4	A	1248	1249	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1060	1061	first strand
Strand 2	A	1076	1077	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1104	1105	first strand
Strand 2	A	1185	1186	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1119	1122	first strand
Strand 2	A	1176	1179	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1403	1406	first strand
Strand 2	A	1652	1656	anti-parallel
Strand 3	A	1638	1642	anti-parallel
Strand 4	A	1538	1540	parallel
Strand 5	A	1572	1575	parallel
Strand 6	A	1624	1625	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1604	1605	first strand
Strand 2	A	1631	1632	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1723	1724	first strand
Strand 2	A	1731	1732	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	13	first strand
Strand 2	G	16	23	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	272	first strand
Strand 2	G	156	160	parallel
Strand 3	G	500	503	parallel
Strand 4	G	526	529	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	418	420	first strand
Strand 2	G	338	342	anti-parallel
Strand 3	G	376	380	anti-parallel
Strand 4	G	367	371	anti-parallel
Strand 5	G	488	489	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	577	580	first strand
Strand 2	G	568	572	anti-parallel
Strand 3	G	1099	1100	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	592	594	first strand
Strand 2	G	616	620	parallel
Strand 3	G	648	652	parallel
Strand 4	G	678	682	parallel
Strand 5	G	702	705	parallel
Strand 6	G	728	732	parallel
Strand 7	G	763	767	parallel
Strand 8	G	799	800	parallel
Strand 9	G	592	594	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	739	740	first strand
Strand 2	G	853	856	anti-parallel
Strand 3	G	844	847	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	906	907	first strand
Strand 2	G	910	911	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	931	932	first strand
Strand 2	G	937	938	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1126	1128	first strand
Strand 2	G	1181	1185	anti-parallel
Strand 3	G	1194	1198	anti-parallel
Strand 4	G	1209	1212	anti-parallel
Strand 5	G	1218	1225	anti-parallel
Strand 6	G	1234	1242	anti-parallel
Strand 7	G	1251	1252	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1158	1160	first strand
Strand 2	G	1165	1167	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1200	1201	first strand
Strand 2	G	1204	1205	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1284	1286	first strand
Strand 2	G	1371	1382	anti-parallel
Strand 3	G	1290	1291	anti-parallel

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There are 10 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1284	1286	first strand
Strand 2	G	1371	1382	anti-parallel
Strand 3	G	1387	1398	anti-parallel
Strand 4	G	1401	1413	anti-parallel
Strand 5	G	1354	1359	anti-parallel
Strand 6	G	1605	1612	anti-parallel
Strand 7	G	1649	1657	anti-parallel
Strand 8	G	1635	1643	anti-parallel
Strand 9	G	1621	1632	anti-parallel
Strand 10	G	1531	1545	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1423	1427	first strand
Strand 2	G	1469	1474	anti-parallel
Strand 3	G	1480	1492	anti-parallel
Strand 4	G	1498	1508	anti-parallel
Strand 5	G	1450	1452	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1423	1427	first strand
Strand 2	G	1469	1474	anti-parallel
Strand 3	G	1480	1492	anti-parallel
Strand 4	G	1463	1466	anti-parallel
Strand 5	G	1431	1434	anti-parallel
Strand 6	G	1525	1526	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1716	1720	first strand
Strand 2	G	1761	1765	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1737	1738	first strand
Strand 2	G	1749	1750	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1741	1742	first strand
Strand 2	G	1745	1746	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1886	1893	first strand
Strand 2	G	1897	1903	anti-parallel
Strand 3	G	1852	1857	anti-parallel
Strand 4	G	1966	1968	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U5U