Analysis of interatomic Contacts of Structural Units in PDB entry:
6U60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U60 entry

There are 2 chains in PDB entry 6U60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14ILE 378
B
 ARG 14ILE 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6U60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 37Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
66 73Right-handed alpha
Helix 4
AA4
A
82 96Right-handed alpha
Helix 5
AA5
A
111 123Right-handed alpha
Helix 6
AA6
A
141 145Right-handed 310
Helix 7
AA7
A
164 175Right-handed alpha
Helix 8
AA8
A
176 179Right-handed 310
Helix 9
AA9
A
186 198Right-handed alpha
Helix 10
AB1
A
198 217Right-handed alpha
Helix 11
AB2
A
220 226Right-handed alpha
Helix 12
AB3
A
228 234Right-handed alpha
Helix 13
AB4
A
235 239Right-handed 310
Helix 14
AB5
A
240 251Right-handed alpha
Helix 15
AB6
A
251 275Right-handed alpha
Helix 16
AB7
A
277 295Right-handed alpha
Helix 17
AB8
A
318 330Right-handed alpha
Helix 18
AB9
A
356 370Right-handed alpha
Helix 19
AC1
B
23 37Right-handed alpha
Helix 20
AC2
B
47 57Right-handed alpha
Helix 21
AC3
B
66 73Right-handed alpha
Helix 22
AC4
B
82 96Right-handed alpha
Helix 23
AC5
B
111 123Right-handed alpha
Helix 24
AC6
B
141 145Right-handed 310
Helix 25
AC7
B
164 175Right-handed alpha
Helix 26
AC8
B
176 179Right-handed 310
Helix 27
AC9
B
186 198Right-handed alpha
Helix 28
AD1
B
198 217Right-handed alpha
Helix 29
AD2
B
221 226Right-handed alpha
Helix 30
AD3
B
229 235Right-handed alpha
Helix 31
AD4
B
236 239Right-handed 310
Helix 32
AD5
B
240 251Right-handed alpha
Helix 33
AD6
B
251 275Right-handed alpha
Helix 34
AD7
B
277 294Right-handed alpha
Helix 35
AD8
B
318 330Right-handed alpha
Helix 36
AD9
B
356 370Right-handed alpha
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There are 5 sheets in PDB entry 6U60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
39 44parallel
Strand 3
A
15 20parallel
Strand 4
A
76 79parallel
Strand 5
A
103 106parallel
Strand 6
A
127 133parallel
Strand 7
A
154 159anti-parallel
Strand 8
A
181 184parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
B
343 344parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
307 314anti-parallel
Strand 4
A
374 375anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
39 44parallel
Strand 3
B
15 20parallel
Strand 4
B
76 79parallel
Strand 5
B
103 106parallel
Strand 6
B
127 133parallel
Strand 7
B
154 159anti-parallel
Strand 8
B
181 184parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 339first strand
Strand 2
B
350 353anti-parallel
Strand 3
B
308 311anti-parallel
Strand 4
B
374 375anti-parallel
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