Analysis of interatomic Contacts of Structural Units in PDB entry:
6U61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U61 entry

There are 8 chains in PDB entry 6U61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 70LEU 187
B
 LYS 71LEU 187
E
 TRP 1PRO 5
E
 VAL 7LYS 8
E
 GLY 10CYS 11
D
 TRP 1PRO 5
D
 VAL 7LYS 8
D
 GLY 10CYS 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6U61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 85Right-handed alpha
Helix 2
AA2
A
85 92Right-handed alpha
Helix 3
AA3
A
96 100Right-handed 310
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
112 117Right-handed alpha
Helix 6
AA6
A
122 132Right-handed alpha
Helix 7
AA7
A
137 156Right-handed alpha
Helix 8
AA8
A
160 178Right-handed alpha
Helix 9
AA9
B
76 85Right-handed alpha
Helix 10
AB1
B
85 92Right-handed alpha
Helix 11
AB2
B
96 100Right-handed 310
Helix 12
AB3
B
104 109Right-handed alpha
Helix 13
AB4
B
112 117Right-handed alpha
Helix 14
AB5
B
122 132Right-handed alpha
Helix 15
AB6
B
137 156Right-handed alpha
Helix 16
AB7
B
160 178Right-handed alpha
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There are 2 sheets in PDB entry 6U61. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 4first strand
Strand 2
E
8 9anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
8 9anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il