Analysis of interatomic Contacts of Structural Units in PDB entry:
6U78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U78 entry

There are 4 chains in PDB entry 6U78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	GLN 425
B	SER 2	LEU 422
C	PRO 8	ASN 424
D	PRO 8	GLY 426

There are 68 helices in PDB entry 6U78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	28	Right-handed alpha
Helix 2	AA2	A	40	46	Right-handed alpha
Helix 3	AA3	A	47	53	Right-handed 310
Helix 4	AA4	A	75	87	Right-handed alpha
Helix 5	AA5	A	89	91	Right-handed 310
Helix 6	AA6	A	99	114	Right-handed alpha
Helix 7	AA7	A	122	126	Right-handed 310
Helix 8	AA8	A	139	149	Right-handed alpha
Helix 9	AA9	A	164	175	Right-handed alpha
Helix 10	AB1	A	196	204	Right-handed alpha
Helix 11	AB2	A	235	243	Right-handed alpha
Helix 12	AB3	A	271	283	Right-handed alpha
Helix 13	AB4	A	290	302	Right-handed alpha
Helix 14	AB5	A	303	334	Right-handed alpha
Helix 15	AB6	A	358	368	Right-handed alpha
Helix 16	AB7	A	380	384	Right-handed 310
Helix 17	AB8	A	399	425	Right-handed alpha
Helix 18	AB9	B	7	29	Right-handed alpha
Helix 19	AC1	B	40	46	Right-handed alpha
Helix 20	AC2	B	47	53	Right-handed 310
Helix 21	AC3	B	75	87	Right-handed alpha
Helix 22	AC4	B	89	91	Right-handed 310
Helix 23	AC5	B	99	114	Right-handed alpha
Helix 24	AC6	B	122	126	Right-handed 310
Helix 25	AC7	B	139	149	Right-handed alpha
Helix 26	AC8	B	164	175	Right-handed alpha
Helix 27	AC9	B	196	204	Right-handed alpha
Helix 28	AD1	B	235	243	Right-handed alpha
Helix 29	AD2	B	271	283	Right-handed alpha
Helix 30	AD3	B	290	302	Right-handed alpha
Helix 31	AD4	B	303	334	Right-handed alpha
Helix 32	AD5	B	358	368	Right-handed alpha
Helix 33	AD6	B	380	384	Right-handed 310
Helix 34	AD7	B	399	421	Right-handed alpha
Helix 35	AD8	C	9	28	Right-handed alpha
Helix 36	AD9	C	40	46	Right-handed alpha
Helix 37	AE1	C	47	53	Right-handed 310
Helix 38	AE2	C	75	87	Right-handed alpha
Helix 39	AE3	C	89	91	Right-handed 310
Helix 40	AE4	C	99	114	Right-handed alpha
Helix 41	AE5	C	122	126	Right-handed 310
Helix 42	AE6	C	139	149	Right-handed alpha
Helix 43	AE7	C	164	175	Right-handed alpha
Helix 44	AE8	C	196	206	Right-handed alpha
Helix 45	AE9	C	235	243	Right-handed alpha
Helix 46	AF1	C	271	283	Right-handed alpha
Helix 47	AF2	C	290	302	Right-handed alpha
Helix 48	AF3	C	303	334	Right-handed alpha
Helix 49	AF4	C	358	368	Right-handed alpha
Helix 50	AF5	C	380	384	Right-handed 310
Helix 51	AF6	C	399	424	Right-handed alpha
Helix 52	AF7	D	9	28	Right-handed alpha
Helix 53	AF8	D	40	46	Right-handed alpha
Helix 54	AF9	D	47	53	Right-handed 310
Helix 55	AG1	D	75	87	Right-handed alpha
Helix 56	AG2	D	89	91	Right-handed 310
Helix 57	AG3	D	99	114	Right-handed alpha
Helix 58	AG4	D	122	126	Right-handed 310
Helix 59	AG5	D	139	149	Right-handed alpha
Helix 60	AG6	D	164	175	Right-handed alpha
Helix 61	AG7	D	196	206	Right-handed alpha
Helix 62	AG8	D	235	243	Right-handed alpha
Helix 63	AG9	D	271	286	Right-handed alpha
Helix 64	AH1	D	290	302	Right-handed alpha
Helix 65	AH2	D	303	334	Right-handed alpha
Helix 66	AH3	D	358	368	Right-handed alpha
Helix 67	AH4	D	380	384	Right-handed 310
Helix 68	AH5	D	399	425	Right-handed alpha

There are 12 sheets in PDB entry 6U78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	371	372	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	266	269	anti-parallel
Strand 3	A	249	254	anti-parallel
Strand 4	A	214	218	parallel
Strand 5	A	178	183	parallel
Strand 6	A	131	136	parallel
Strand 7	A	152	157	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	350	353	anti-parallel
Strand 3	A	390	393	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	371	372	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	266	269	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	214	218	parallel
Strand 5	B	178	183	parallel
Strand 6	B	131	136	parallel
Strand 7	B	152	157	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	350	353	anti-parallel
Strand 3	B	390	393	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	371	372	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	266	269	anti-parallel
Strand 3	C	249	254	anti-parallel
Strand 4	C	214	218	parallel
Strand 5	C	178	183	parallel
Strand 6	C	131	136	parallel
Strand 7	C	152	157	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	350	353	anti-parallel
Strand 3	C	390	393	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	371	372	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	266	269	anti-parallel
Strand 3	D	249	254	anti-parallel
Strand 4	D	214	218	parallel
Strand 5	D	178	183	parallel
Strand 6	D	131	136	parallel
Strand 7	D	152	157	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	341	first strand
Strand 2	D	350	353	anti-parallel
Strand 3	D	390	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U78

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U78