Analysis of interatomic Contacts of Structural Units in PDB entry:
6U7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U7E entry

There are 2 chains in PDB entry 6U7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 68	LYS 967
B	SER 68	GLU 411

There are 83 helices in PDB entry 6U7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	216	220	Right-handed 310
Helix 3	AA3	A	276	280	Right-handed 310
Helix 4	AA4	A	305	312	Right-handed alpha
Helix 5	AA5	A	314	332	Right-handed alpha
Helix 6	AA6	A	365	367	Right-handed 310
Helix 7	AA7	A	375	393	Right-handed alpha
Helix 8	AA8	A	403	406	Right-handed 310
Helix 9	AA9	A	407	426	Right-handed alpha
Helix 10	AB1	A	427	433	Right-handed 310
Helix 11	AB2	A	434	439	Right-handed alpha
Helix 12	AB3	A	439	448	Right-handed alpha
Helix 13	AB4	A	458	462	Right-handed 310
Helix 14	AB5	A	464	471	Right-handed alpha
Helix 15	AB6	A	473	492	Right-handed alpha
Helix 16	AB7	A	492	507	Right-handed alpha
Helix 17	AB8	A	513	528	Right-handed alpha
Helix 18	AB9	A	535	545	Right-handed alpha
Helix 19	AC1	A	610	613	Right-handed 310
Helix 20	AC2	A	624	627	Right-handed 310
Helix 21	AC3	A	635	650	Right-handed alpha
Helix 22	AC4	A	651	653	Right-handed 310
Helix 23	AC5	A	654	671	Right-handed alpha
Helix 24	AC6	A	675	682	Right-handed alpha
Helix 25	AC7	A	683	689	Right-handed 310
Helix 26	AC8	A	692	710	Right-handed alpha
Helix 27	AC9	A	714	737	Right-handed alpha
Helix 28	AD1	A	746	763	Right-handed alpha
Helix 29	AD2	A	765	782	Right-handed alpha
Helix 30	AD3	A	789	804	Right-handed alpha
Helix 31	AD4	A	805	818	Right-handed alpha
Helix 32	AD5	A	821	833	Right-handed alpha
Helix 33	AD6	A	837	848	Right-handed alpha
Helix 34	AD7	A	855	869	Right-handed alpha
Helix 35	AD8	A	872	883	Right-handed alpha
Helix 36	AD9	A	883	891	Right-handed alpha
Helix 37	AE1	A	897	906	Right-handed alpha
Helix 38	AE2	A	911	925	Right-handed alpha
Helix 39	AE3	A	930	932	Right-handed 310
Helix 40	AE4	A	933	966	Right-handed alpha
Helix 41	AE5	B	69	73	Right-handed 310
Helix 42	AE6	B	216	220	Right-handed 310
Helix 43	AE7	B	276	280	Right-handed 310
Helix 44	AE8	B	305	312	Right-handed alpha
Helix 45	AE9	B	314	332	Right-handed alpha
Helix 46	AF1	B	364	368	Right-handed alpha
Helix 47	AF2	B	375	395	Right-handed alpha
Helix 48	AF3	B	403	405	Right-handed 310
Helix 49	AF4	B	406	426	Right-handed alpha
Helix 50	AF5	B	427	433	Right-handed 310
Helix 51	AF6	B	434	439	Right-handed alpha
Helix 52	AF7	B	439	448	Right-handed alpha
Helix 53	AF8	B	458	462	Right-handed 310
Helix 54	AF9	B	464	471	Right-handed alpha
Helix 55	AG1	B	473	492	Right-handed alpha
Helix 56	AG2	B	492	507	Right-handed alpha
Helix 57	AG3	B	513	528	Right-handed alpha
Helix 58	AG4	B	535	545	Right-handed alpha
Helix 59	AG5	B	610	613	Right-handed 310
Helix 60	AG6	B	624	627	Right-handed 310
Helix 61	AG7	B	635	649	Right-handed alpha
Helix 62	AG8	B	650	653	Right-handed 310
Helix 63	AG9	B	654	671	Right-handed alpha
Helix 64	AH1	B	675	682	Right-handed alpha
Helix 65	AH2	B	683	689	Right-handed 310
Helix 66	AH3	B	691	710	Right-handed alpha
Helix 67	AH4	B	714	737	Right-handed alpha
Helix 68	AH5	B	746	763	Right-handed alpha
Helix 69	AH6	B	765	782	Right-handed alpha
Helix 70	AH7	B	789	804	Right-handed alpha
Helix 71	AH8	B	805	818	Right-handed alpha
Helix 72	AH9	B	821	832	Right-handed alpha
Helix 73	AI1	B	833	835	Right-handed 310
Helix 74	AI2	B	837	849	Right-handed alpha
Helix 75	AI3	B	855	857	Right-handed 310
Helix 76	AI4	B	858	869	Right-handed alpha
Helix 77	AI5	B	869	883	Right-handed alpha
Helix 78	AI6	B	883	890	Right-handed alpha
Helix 79	AI7	B	897	906	Right-handed alpha
Helix 80	AI8	B	907	909	Right-handed 310
Helix 81	AI9	B	911	925	Right-handed alpha
Helix 82	AJ1	B	930	932	Right-handed 310
Helix 83	AJ2	B	933	966	Right-handed alpha

There are 26 sheets in PDB entry 6U7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	137	141	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	102	113	anti-parallel
Strand 4	A	80	91	anti-parallel
Strand 5	A	232	240	parallel
Strand 6	A	264	268	anti-parallel
Strand 7	A	256	257	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	150	156	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	200	first strand
Strand 2	A	203	211	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	282	285	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	293	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	340	346	parallel
Strand 4	A	359	363	parallel
Strand 5	A	353	354	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	510	512	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	608	first strand
Strand 2	A	560	565	anti-parallel
Strand 3	A	550	555	anti-parallel
Strand 4	A	631	633	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	A	600	602	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	620	622	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	175	185	anti-parallel
Strand 3	B	137	141	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	175	185	anti-parallel
Strand 3	B	102	113	anti-parallel
Strand 4	B	80	91	anti-parallel
Strand 5	B	232	240	parallel
Strand 6	B	264	268	anti-parallel
Strand 7	B	256	257	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	150	156	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	200	first strand
Strand 2	B	203	211	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	282	285	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	293	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	340	346	parallel
Strand 4	B	359	363	parallel
Strand 5	B	353	354	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	510	512	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	608	first strand
Strand 2	B	560	565	anti-parallel
Strand 3	B	550	555	anti-parallel
Strand 4	B	631	634	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	B	600	602	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	596	first strand
Strand 2	B	590	592	anti-parallel
Strand 3	B	620	622	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	303	305	anti-parallel
Strand 3	C	349	351	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	324	325	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	384	386	anti-parallel
Strand 3	C	407	415	anti-parallel
Strand 4	C	394	402	anti-parallel
Strand 5	C	358	362	anti-parallel
Strand 6	C	354	355	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	329	first strand
Strand 2	D	300	306	anti-parallel
Strand 3	D	346	352	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	324	325	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	384	386	anti-parallel
Strand 3	D	407	416	anti-parallel
Strand 4	D	394	402	anti-parallel
Strand 5	D	358	362	anti-parallel
Strand 6	D	354	355	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U7E