Analysis of interatomic Contacts of Structural Units in PDB entry:
6U7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U7F entry

There are 2 chains in PDB entry 6U7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 66	LYS 967
B	ASP 66	ASN 410

There are 82 helices in PDB entry 6U7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	216	220	Right-handed 310
Helix 3	AA3	A	276	280	Right-handed 310
Helix 4	AA4	A	305	312	Right-handed alpha
Helix 5	AA5	A	314	332	Right-handed alpha
Helix 6	AA6	A	364	368	Right-handed alpha
Helix 7	AA7	A	375	393	Right-handed alpha
Helix 8	AA8	A	403	406	Right-handed 310
Helix 9	AA9	A	407	426	Right-handed alpha
Helix 10	AB1	A	430	433	Right-handed 310
Helix 11	AB2	A	434	439	Right-handed alpha
Helix 12	AB3	A	439	448	Right-handed alpha
Helix 13	AB4	A	458	462	Right-handed 310
Helix 14	AB5	A	464	471	Right-handed alpha
Helix 15	AB6	A	473	491	Right-handed alpha
Helix 16	AB7	A	492	507	Right-handed alpha
Helix 17	AB8	A	513	528	Right-handed alpha
Helix 18	AB9	A	535	545	Right-handed alpha
Helix 19	AC1	A	610	613	Right-handed 310
Helix 20	AC2	A	624	627	Right-handed 310
Helix 21	AC3	A	635	650	Right-handed alpha
Helix 22	AC4	A	651	653	Right-handed 310
Helix 23	AC5	A	654	671	Right-handed alpha
Helix 24	AC6	A	675	682	Right-handed alpha
Helix 25	AC7	A	683	689	Right-handed 310
Helix 26	AC8	A	691	710	Right-handed alpha
Helix 27	AC9	A	714	737	Right-handed alpha
Helix 28	AD1	A	746	763	Right-handed alpha
Helix 29	AD2	A	765	782	Right-handed alpha
Helix 30	AD3	A	789	804	Right-handed alpha
Helix 31	AD4	A	805	818	Right-handed alpha
Helix 32	AD5	A	821	832	Right-handed alpha
Helix 33	AD6	A	833	835	Right-handed 310
Helix 34	AD7	A	837	848	Right-handed alpha
Helix 35	AD8	A	855	857	Right-handed 310
Helix 36	AD9	A	858	869	Right-handed alpha
Helix 37	AE1	A	872	889	Right-handed alpha
Helix 38	AE2	A	897	907	Right-handed alpha
Helix 39	AE3	A	911	926	Right-handed alpha
Helix 40	AE4	A	930	932	Right-handed 310
Helix 41	AE5	A	933	966	Right-handed alpha
Helix 42	AE6	B	69	73	Right-handed 310
Helix 43	AE7	B	216	221	Right-handed alpha
Helix 44	AE8	B	276	280	Right-handed 310
Helix 45	AE9	B	305	312	Right-handed alpha
Helix 46	AF1	B	314	333	Right-handed alpha
Helix 47	AF2	B	365	367	Right-handed 310
Helix 48	AF3	B	375	393	Right-handed alpha
Helix 49	AF4	B	403	405	Right-handed 310
Helix 50	AF5	B	406	426	Right-handed alpha
Helix 51	AF6	B	430	433	Right-handed 310
Helix 52	AF7	B	434	439	Right-handed alpha
Helix 53	AF8	B	439	448	Right-handed alpha
Helix 54	AF9	B	458	462	Right-handed 310
Helix 55	AG1	B	464	471	Right-handed alpha
Helix 56	AG2	B	473	491	Right-handed alpha
Helix 57	AG3	B	492	508	Right-handed alpha
Helix 58	AG4	B	513	529	Right-handed alpha
Helix 59	AG5	B	535	545	Right-handed alpha
Helix 60	AG6	B	610	613	Right-handed 310
Helix 61	AG7	B	624	627	Right-handed 310
Helix 62	AG8	B	635	650	Right-handed alpha
Helix 63	AG9	B	651	653	Right-handed 310
Helix 64	AH1	B	654	671	Right-handed alpha
Helix 65	AH2	B	675	682	Right-handed alpha
Helix 66	AH3	B	683	689	Right-handed 310
Helix 67	AH4	B	691	710	Right-handed alpha
Helix 68	AH5	B	714	737	Right-handed alpha
Helix 69	AH6	B	746	763	Right-handed alpha
Helix 70	AH7	B	765	782	Right-handed alpha
Helix 71	AH8	B	789	804	Right-handed alpha
Helix 72	AH9	B	805	818	Right-handed alpha
Helix 73	AI1	B	821	832	Right-handed alpha
Helix 74	AI2	B	833	835	Right-handed 310
Helix 75	AI3	B	837	848	Right-handed alpha
Helix 76	AI4	B	855	857	Right-handed 310
Helix 77	AI5	B	858	869	Right-handed alpha
Helix 78	AI6	B	869	889	Right-handed alpha
Helix 79	AI7	B	897	907	Right-handed alpha
Helix 80	AI8	B	911	925	Right-handed alpha
Helix 81	AI9	B	930	932	Right-handed 310
Helix 82	AJ1	B	933	966	Right-handed alpha

There are 24 sheets in PDB entry 6U7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	137	141	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	102	113	anti-parallel
Strand 4	A	80	92	anti-parallel
Strand 5	A	232	240	parallel
Strand 6	A	264	268	anti-parallel
Strand 7	A	256	257	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	150	156	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	200	first strand
Strand 2	A	203	211	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	282	285	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	293	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	340	346	parallel
Strand 4	A	359	363	parallel
Strand 5	A	353	354	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	511	512	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	608	first strand
Strand 2	A	560	565	anti-parallel
Strand 3	A	550	555	anti-parallel
Strand 4	A	631	634	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	A	600	602	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	596	first strand
Strand 2	A	590	592	anti-parallel
Strand 3	A	620	622	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	175	185	anti-parallel
Strand 3	B	137	141	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	175	185	anti-parallel
Strand 3	B	102	113	anti-parallel
Strand 4	B	80	92	anti-parallel
Strand 5	B	232	240	parallel
Strand 6	B	261	268	anti-parallel
Strand 7	B	256	258	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	150	156	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	200	first strand
Strand 2	B	203	211	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	282	285	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	293	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	340	346	parallel
Strand 4	B	359	363	parallel
Strand 5	B	353	354	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	511	512	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	608	first strand
Strand 2	B	560	565	anti-parallel
Strand 3	B	550	555	anti-parallel
Strand 4	B	631	634	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	B	600	602	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	596	first strand
Strand 2	B	590	592	anti-parallel
Strand 3	B	620	622	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	329	first strand
Strand 2	C	303	309	anti-parallel
Strand 3	C	349	352	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	358	362	anti-parallel
Strand 3	C	394	402	anti-parallel
Strand 4	C	406	415	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	329	first strand
Strand 2	D	303	309	anti-parallel
Strand 3	D	349	352	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	358	362	anti-parallel
Strand 3	D	394	402	anti-parallel
Strand 4	D	407	416	anti-parallel
Strand 5	D	384	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U7F