Analysis of interatomic Contacts of Structural Units in PDB entry:
6U7I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U7I entry

There are 4 chains in PDB entry 6U7I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	PHE 596
B	LEU 2	LYS 597
C	MET 1	LYS 597
D	LEU 2	LYS 597

There are 41 helices in PDB entry 6U7I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	161	171	Right-handed alpha
Helix 2	AA2	A	319	334	Right-handed alpha
Helix 3	AA3	A	346	357	Right-handed alpha
Helix 4	AA4	A	376	381	Right-handed alpha
Helix 5	AA5	A	383	398	Right-handed alpha
Helix 6	AA6	A	418	437	Right-handed alpha
Helix 7	AA7	A	457	461	Right-handed 310
Helix 8	AA8	A	478	495	Right-handed alpha
Helix 9	AA9	A	522	538	Right-handed alpha
Helix 10	AB1	A	578	589	Right-handed alpha
Helix 11	AB2	B	161	170	Right-handed alpha
Helix 12	AB3	B	319	333	Right-handed alpha
Helix 13	AB4	B	346	357	Right-handed alpha
Helix 14	AB5	B	376	381	Right-handed alpha
Helix 15	AB6	B	383	399	Right-handed alpha
Helix 16	AB7	B	418	437	Right-handed alpha
Helix 17	AB8	B	457	461	Right-handed 310
Helix 18	AB9	B	478	494	Right-handed alpha
Helix 19	AC1	B	495	497	Right-handed 310
Helix 20	AC2	B	522	538	Right-handed alpha
Helix 21	AC3	B	578	589	Right-handed alpha
Helix 22	AC4	C	161	171	Right-handed alpha
Helix 23	AC5	C	319	334	Right-handed alpha
Helix 24	AC6	C	346	357	Right-handed alpha
Helix 25	AC7	C	376	381	Right-handed alpha
Helix 26	AC8	C	383	399	Right-handed alpha
Helix 27	AC9	C	418	437	Right-handed alpha
Helix 28	AD1	C	457	461	Right-handed 310
Helix 29	AD2	C	478	495	Right-handed alpha
Helix 30	AD3	C	522	538	Right-handed alpha
Helix 31	AD4	C	578	589	Right-handed alpha
Helix 32	AD5	D	161	171	Right-handed alpha
Helix 33	AD6	D	319	333	Right-handed alpha
Helix 34	AD7	D	346	357	Right-handed alpha
Helix 35	AD8	D	376	381	Right-handed alpha
Helix 36	AD9	D	383	399	Right-handed alpha
Helix 37	AE1	D	418	437	Right-handed alpha
Helix 38	AE2	D	457	461	Right-handed 310
Helix 39	AE3	D	478	495	Right-handed alpha
Helix 40	AE4	D	522	538	Right-handed alpha
Helix 41	AE5	D	578	590	Right-handed alpha

There are 27 sheets in PDB entry 6U7I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	65	73	anti-parallel
Strand 4	A	126	134	anti-parallel
Strand 5	A	93	98	anti-parallel
Strand 6	A	101	107	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	186	187	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	82	87	anti-parallel
Strand 3	A	191	196	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	208	first strand
Strand 2	A	213	220	anti-parallel
Strand 3	A	245	249	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	242	first strand
Strand 2	A	226	231	anti-parallel
Strand 3	A	265	272	anti-parallel
Strand 4	A	275	282	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	289	first strand
Strand 2	A	292	295	anti-parallel
Strand 3	A	298	299	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	306	first strand
Strand 2	A	337	339	parallel
Strand 3	A	359	363	parallel
Strand 4	A	404	411	parallel
Strand 5	A	443	447	parallel
Strand 6	A	464	467	parallel
Strand 7	A	500	504	parallel
Strand 8	A	543	548	parallel
Strand 9	A	302	306	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	191	196	anti-parallel
Strand 3	B	82	87	anti-parallel
Strand 4	B	113	116	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	45	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	65	73	anti-parallel
Strand 4	B	126	134	anti-parallel
Strand 5	B	93	98	anti-parallel
Strand 6	B	101	107	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	208	first strand
Strand 2	B	213	220	anti-parallel
Strand 3	B	245	249	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	226	231	anti-parallel
Strand 3	B	265	272	anti-parallel
Strand 4	B	275	282	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	289	first strand
Strand 2	B	292	295	anti-parallel
Strand 3	B	298	299	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	306	first strand
Strand 2	B	337	340	parallel
Strand 3	B	359	363	parallel
Strand 4	B	404	411	parallel
Strand 5	B	443	447	parallel
Strand 6	B	464	467	parallel
Strand 7	B	500	504	parallel
Strand 8	B	543	548	parallel
Strand 9	B	302	306	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	82	87	anti-parallel
Strand 4	C	113	116	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	65	73	anti-parallel
Strand 4	C	126	134	anti-parallel
Strand 5	C	93	98	anti-parallel
Strand 6	C	101	107	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	176	177	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	208	first strand
Strand 2	C	213	220	anti-parallel
Strand 3	C	245	249	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	241	first strand
Strand 2	C	226	231	anti-parallel
Strand 3	C	266	272	anti-parallel
Strand 4	C	275	281	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	289	first strand
Strand 2	C	292	295	anti-parallel
Strand 3	C	298	299	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	306	first strand
Strand 2	C	337	339	parallel
Strand 3	C	359	363	parallel
Strand 4	C	404	411	parallel
Strand 5	C	443	447	parallel
Strand 6	C	464	467	parallel
Strand 7	C	500	504	parallel
Strand 8	C	543	548	parallel
Strand 9	C	302	306	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	191	196	anti-parallel
Strand 3	D	82	87	anti-parallel
Strand 4	D	113	116	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	65	73	anti-parallel
Strand 4	D	126	134	anti-parallel
Strand 5	D	93	98	anti-parallel
Strand 6	D	101	107	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	176	177	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	208	first strand
Strand 2	D	213	220	anti-parallel
Strand 3	D	245	249	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	241	first strand
Strand 2	D	226	231	anti-parallel
Strand 3	D	266	272	anti-parallel
Strand 4	D	275	281	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	289	first strand
Strand 2	D	292	295	anti-parallel
Strand 3	D	298	299	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	306	first strand
Strand 2	D	337	339	parallel
Strand 3	D	359	363	parallel
Strand 4	D	404	411	parallel
Strand 5	D	443	447	parallel
Strand 6	D	464	467	parallel
Strand 7	D	500	504	parallel
Strand 8	D	543	548	parallel
Strand 9	D	302	306	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U7I

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U7I