Analysis of interatomic Contacts of Structural Units in PDB entry:
6U7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U7J entry

There are 4 chains in PDB entry 6U7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	MET 593
B	PHE 8	MET 593
C	ASP 9	MET 593
D	ASP 9	MET 593

There are 52 helices in PDB entry 6U7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	42	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	67	72	Right-handed alpha
Helix 4	AA4	A	86	90	Right-handed 310
Helix 5	AA5	A	318	332	Right-handed alpha
Helix 6	AA6	A	345	356	Right-handed alpha
Helix 7	AA7	A	385	404	Right-handed alpha
Helix 8	AA8	A	424	440	Right-handed alpha
Helix 9	AA9	A	458	462	Right-handed 310
Helix 10	AB1	A	479	481	Right-handed 310
Helix 11	AB2	A	482	499	Right-handed alpha
Helix 12	AB3	A	524	541	Right-handed alpha
Helix 13	AB4	A	580	593	Right-handed alpha
Helix 14	AB5	B	37	42	Right-handed alpha
Helix 15	AB6	B	43	47	Right-handed 310
Helix 16	AB7	B	67	72	Right-handed alpha
Helix 17	AB8	B	86	90	Right-handed 310
Helix 18	AB9	B	318	333	Right-handed alpha
Helix 19	AC1	B	345	356	Right-handed alpha
Helix 20	AC2	B	385	404	Right-handed alpha
Helix 21	AC3	B	423	440	Right-handed alpha
Helix 22	AC4	B	458	462	Right-handed 310
Helix 23	AC5	B	479	481	Right-handed 310
Helix 24	AC6	B	482	499	Right-handed alpha
Helix 25	AC7	B	524	541	Right-handed alpha
Helix 26	AC8	B	580	593	Right-handed alpha
Helix 27	AC9	C	37	42	Right-handed alpha
Helix 28	AD1	C	43	47	Right-handed 310
Helix 29	AD2	C	67	72	Right-handed alpha
Helix 30	AD3	C	86	90	Right-handed 310
Helix 31	AD4	C	318	333	Right-handed alpha
Helix 32	AD5	C	345	356	Right-handed alpha
Helix 33	AD6	C	385	404	Right-handed alpha
Helix 34	AD7	C	424	440	Right-handed alpha
Helix 35	AD8	C	458	462	Right-handed 310
Helix 36	AD9	C	479	481	Right-handed 310
Helix 37	AE1	C	482	499	Right-handed alpha
Helix 38	AE2	C	524	541	Right-handed alpha
Helix 39	AE3	C	581	592	Right-handed alpha
Helix 40	AE4	D	37	42	Right-handed alpha
Helix 41	AE5	D	43	47	Right-handed 310
Helix 42	AE6	D	67	72	Right-handed alpha
Helix 43	AE7	D	86	90	Right-handed 310
Helix 44	AE8	D	318	332	Right-handed alpha
Helix 45	AE9	D	345	356	Right-handed alpha
Helix 46	AF1	D	385	404	Right-handed alpha
Helix 47	AF2	D	424	440	Right-handed alpha
Helix 48	AF3	D	458	462	Right-handed 310
Helix 49	AF4	D	479	481	Right-handed 310
Helix 50	AF5	D	482	499	Right-handed alpha
Helix 51	AF6	D	524	541	Right-handed alpha
Helix 52	AF7	D	580	593	Right-handed alpha

There are 32 sheets in PDB entry 6U7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	188	193	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	124	127	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	27	32	anti-parallel
Strand 3	A	76	85	anti-parallel
Strand 4	A	135	144	anti-parallel
Strand 5	A	104	109	anti-parallel
Strand 6	A	112	118	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	183	184	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	171	173	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	208	first strand
Strand 2	A	211	220	anti-parallel
Strand 3	A	246	251	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	265	271	anti-parallel
Strand 4	A	274	280	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	292	294	anti-parallel
Strand 3	A	297	298	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	305	first strand
Strand 2	A	336	338	parallel
Strand 3	A	358	362	parallel
Strand 4	A	409	416	parallel
Strand 5	A	445	449	parallel
Strand 6	A	465	468	parallel
Strand 7	A	502	506	parallel
Strand 8	A	545	550	parallel
Strand 9	A	301	305	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	188	193	anti-parallel
Strand 3	B	93	98	anti-parallel
Strand 4	B	124	127	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	26	32	anti-parallel
Strand 3	B	76	85	anti-parallel
Strand 4	B	135	144	anti-parallel
Strand 5	B	104	109	anti-parallel
Strand 6	B	112	118	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	183	184	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	171	173	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	208	first strand
Strand 2	B	211	220	anti-parallel
Strand 3	B	246	251	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	227	232	anti-parallel
Strand 3	B	265	271	anti-parallel
Strand 4	B	274	280	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	292	294	anti-parallel
Strand 3	B	297	298	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	305	first strand
Strand 2	B	336	338	parallel
Strand 3	B	358	362	parallel
Strand 4	B	409	416	parallel
Strand 5	B	445	449	parallel
Strand 6	B	465	468	parallel
Strand 7	B	502	506	parallel
Strand 8	B	545	551	parallel
Strand 9	B	301	305	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	188	193	anti-parallel
Strand 3	C	93	98	anti-parallel
Strand 4	C	124	127	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	27	32	anti-parallel
Strand 3	C	76	85	anti-parallel
Strand 4	C	135	144	anti-parallel
Strand 5	C	104	109	anti-parallel
Strand 6	C	112	118	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	183	184	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	158	first strand
Strand 2	C	171	173	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	208	first strand
Strand 2	C	211	220	anti-parallel
Strand 3	C	246	251	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	265	271	anti-parallel
Strand 4	C	274	280	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	287	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	297	298	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	305	first strand
Strand 2	C	336	338	parallel
Strand 3	C	358	362	parallel
Strand 4	C	409	416	parallel
Strand 5	C	445	449	parallel
Strand 6	C	465	468	parallel
Strand 7	C	502	506	parallel
Strand 8	C	545	550	parallel
Strand 9	C	301	305	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	188	193	anti-parallel
Strand 3	D	93	98	anti-parallel
Strand 4	D	124	127	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	57	first strand
Strand 2	D	26	32	anti-parallel
Strand 3	D	76	85	anti-parallel
Strand 4	D	135	144	anti-parallel
Strand 5	D	104	109	anti-parallel
Strand 6	D	112	118	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	183	184	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	171	173	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	208	first strand
Strand 2	D	211	220	anti-parallel
Strand 3	D	246	251	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	228	232	anti-parallel
Strand 3	D	265	271	anti-parallel
Strand 4	D	274	280	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	287	first strand
Strand 2	D	292	294	anti-parallel
Strand 3	D	297	298	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	305	first strand
Strand 2	D	336	338	parallel
Strand 3	D	358	362	parallel
Strand 4	D	409	416	parallel
Strand 5	D	445	449	parallel
Strand 6	D	465	468	parallel
Strand 7	D	502	506	parallel
Strand 8	D	545	550	parallel
Strand 9	D	301	305	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U7J