Analysis of interatomic Contacts of Structural Units in PDB entry:
6U84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U84 entry

There are 4 chains in PDB entry 6U84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 30LEU 719
B
 GLN 30LEU 719
C
 GLN 30LEU 719
D
 GLN 30LEU 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 6U84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 87Right-handed alpha
Helix 2
AA2
A
89 93Right-handed 310
Helix 3
AA3
A
94 103Right-handed alpha
Helix 4
AA4
A
119 127Right-handed alpha
Helix 5
AA5
A
135 147Right-handed alpha
Helix 6
AA6
A
151 155Right-handed 310
Helix 7
AA7
A
166 174Right-handed alpha
Helix 8
AA8
A
176 185Right-handed alpha
Helix 9
AA9
A
212 220Right-handed alpha
Helix 10
AB1
A
222 231Right-handed alpha
Helix 11
AB2
A
248 257Right-handed alpha
Helix 12
AB3
A
260 282Right-handed alpha
Helix 13
AB4
A
297 306Right-handed alpha
Helix 14
AB5
A
308 316Right-handed alpha
Helix 15
AB6
A
355 362Right-handed alpha
Helix 16
AB7
A
368 372Right-handed 310
Helix 17
AB8
A
377 413Right-handed alpha
Helix 18
AB9
A
430 459Right-handed alpha
Helix 19
AC1
A
461 466Right-handed alpha
Helix 20
AC2
A
466 492Right-handed alpha
Helix 21
AC3
A
496 512Right-handed alpha
Helix 22
AC4
A
513 518Right-handed 310
Helix 23
AC5
A
519 530Right-handed alpha
Helix 24
AC6
A
532 560Right-handed alpha
Helix 25
AC7
A
592 602Right-handed alpha
Helix 26
AC8
A
618 649Right-handed alpha
Helix 27
AC9
A
655 672Right-handed alpha
Helix 28
AD1
A
711 719Right-handed alpha
Helix 29
AD2
B
76 87Right-handed alpha
Helix 30
AD3
B
89 93Right-handed 310
Helix 31
AD4
B
94 103Right-handed alpha
Helix 32
AD5
B
119 127Right-handed alpha
Helix 33
AD6
B
135 147Right-handed alpha
Helix 34
AD7
B
151 155Right-handed 310
Helix 35
AD8
B
166 174Right-handed alpha
Helix 36
AD9
B
176 185Right-handed alpha
Helix 37
AE1
B
212 220Right-handed alpha
Helix 38
AE2
B
222 231Right-handed alpha
Helix 39
AE3
B
248 257Right-handed alpha
Helix 40
AE4
B
260 282Right-handed alpha
Helix 41
AE5
B
297 306Right-handed alpha
Helix 42
AE6
B
308 316Right-handed alpha
Helix 43
AE7
B
355 362Right-handed alpha
Helix 44
AE8
B
368 372Right-handed 310
Helix 45
AE9
B
377 413Right-handed alpha
Helix 46
AF1
B
430 459Right-handed alpha
Helix 47
AF2
B
461 466Right-handed alpha
Helix 48
AF3
B
466 492Right-handed alpha
Helix 49
AF4
B
496 512Right-handed alpha
Helix 50
AF5
B
513 518Right-handed 310
Helix 51
AF6
B
519 530Right-handed alpha
Helix 52
AF7
B
532 560Right-handed alpha
Helix 53
AF8
B
592 602Right-handed alpha
Helix 54
AF9
B
618 649Right-handed alpha
Helix 55
AG1
B
655 672Right-handed alpha
Helix 56
AG2
B
711 719Right-handed alpha
Helix 57
AG3
C
76 87Right-handed alpha
Helix 58
AG4
C
89 93Right-handed 310
Helix 59
AG5
C
94 103Right-handed alpha
Helix 60
AG6
C
119 127Right-handed alpha
Helix 61
AG7
C
135 147Right-handed alpha
Helix 62
AG8
C
151 155Right-handed 310
Helix 63
AG9
C
166 174Right-handed alpha
Helix 64
AH1
C
176 185Right-handed alpha
Helix 65
AH2
C
212 220Right-handed alpha
Helix 66
AH3
C
222 231Right-handed alpha
Helix 67
AH4
C
248 257Right-handed alpha
Helix 68
AH5
C
260 282Right-handed alpha
Helix 69
AH6
C
297 306Right-handed alpha
Helix 70
AH7
C
308 316Right-handed alpha
Helix 71
AH8
C
355 362Right-handed alpha
Helix 72
AH9
C
368 372Right-handed 310
Helix 73
AI1
C
377 413Right-handed alpha
Helix 74
AI2
C
430 459Right-handed alpha
Helix 75
AI3
C
461 466Right-handed alpha
Helix 76
AI4
C
466 492Right-handed alpha
Helix 77
AI5
C
496 512Right-handed alpha
Helix 78
AI6
C
513 518Right-handed 310
Helix 79
AI7
C
519 530Right-handed alpha
Helix 80
AI8
C
532 560Right-handed alpha
Helix 81
AI9
C
592 602Right-handed alpha
Helix 82
AJ1
C
618 649Right-handed alpha
Helix 83
AJ2
C
655 672Right-handed alpha
Helix 84
AJ3
C
711 719Right-handed alpha
Helix 85
AJ4
D
76 87Right-handed alpha
Helix 86
AJ5
D
89 93Right-handed 310
Helix 87
AJ6
D
94 103Right-handed alpha
Helix 88
AJ7
D
119 127Right-handed alpha
Helix 89
AJ8
D
135 147Right-handed alpha
Helix 90
AJ9
D
151 155Right-handed 310
Helix 91
AK1
D
166 174Right-handed alpha
Helix 92
AK2
D
176 185Right-handed alpha
Helix 93
AK3
D
212 220Right-handed alpha
Helix 94
AK4
D
222 231Right-handed alpha
Helix 95
AK5
D
248 257Right-handed alpha
Helix 96
AK6
D
260 282Right-handed alpha
Helix 97
AK7
D
297 306Right-handed alpha
Helix 98
AK8
D
308 316Right-handed alpha
Helix 99
AK9
D
355 362Right-handed alpha
Helix 100
AL1
D
368 372Right-handed 310
Helix 101
AL2
D
377 413Right-handed alpha
Helix 102
AL3
D
430 459Right-handed alpha
Helix 103
AL4
D
461 466Right-handed alpha
Helix 104
AL5
D
466 492Right-handed alpha
Helix 105
AL6
D
496 512Right-handed alpha
Helix 106
AL7
D
513 518Right-handed 310
Helix 107
AL8
D
519 530Right-handed alpha
Helix 108
AL9
D
532 560Right-handed alpha
Helix 109
AM1
D
592 602Right-handed alpha
Helix 110
AM2
D
618 649Right-handed alpha
Helix 111
AM3
D
655 672Right-handed alpha
Helix 112
AM4
D
711 719Right-handed alpha
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There are 4 sheets in PDB entry 6U84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 335first strand
Strand 2
A
338 344anti-parallel
Strand 3
A
699 710anti-parallel
Strand 4
A
687 693anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 335first strand
Strand 2
B
338 344anti-parallel
Strand 3
B
699 710anti-parallel
Strand 4
B
687 693anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 335first strand
Strand 2
C
338 344anti-parallel
Strand 3
C
699 710anti-parallel
Strand 4
C
687 693anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 335first strand
Strand 2
D
338 344anti-parallel
Strand 3
D
699 710anti-parallel
Strand 4
D
687 693anti-parallel
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