Analysis of interatomic Contacts of Structural Units in PDB entry:
6U85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U85 entry

There are 2 chains in PDB entry 6U85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1LYS 230
L
 GLU 1GLU 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 6U85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
53 57Right-handed 310
Helix 3
AA3
H
64 67Right-handed 310
Helix 4
AA4
H
198 201Right-handed 310
Helix 5
AA5
H
215 218Right-handed 310
Helix 6
AA6
L
26 30Right-handed 310
Helix 7
AA7
L
84 88Right-handed 310
Helix 8
AA8
L
126 131Right-handed alpha
Helix 9
AA9
L
187 193Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 6U85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
112 116parallel
Strand 3
H
94 101anti-parallel
Strand 4
H
33 40anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
60 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
112 116parallel
Strand 3
H
94 101anti-parallel
Strand 4
H
106 108anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
187 196anti-parallel
Strand 4
H
173 175anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
187 196anti-parallel
Strand 4
H
179 180anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
157 161first strand
Strand 2
H
207 214anti-parallel
Strand 3
H
219 225anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
75 80anti-parallel
Strand 4
L
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
107 112parallel
Strand 3
L
90 95anti-parallel
Strand 4
L
39 43anti-parallel
Strand 5
L
50 54anti-parallel
Strand 6
L
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
107 112parallel
Strand 3
L
90 95anti-parallel
Strand 4
L
102 103anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
119 123first strand
Strand 2
L
135 144anti-parallel
Strand 3
L
178 186anti-parallel
Strand 4
L
164 168anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
150 154first strand
Strand 2
L
196 202anti-parallel
Strand 3
L
210 215anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il