Analysis of interatomic Contacts of Structural Units in PDB entry:
6U88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U88 entry

There are 4 chains in PDB entry 6U88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 75PRO 729
B
 PHE 75PRO 729
C
 PHE 75PRO 729
D
 PHE 75PRO 729
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 6U88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 87Right-handed alpha
Helix 2
AA2
A
95 103Right-handed alpha
Helix 3
AA3
A
119 127Right-handed alpha
Helix 4
AA4
A
135 146Right-handed alpha
Helix 5
AA5
A
167 174Right-handed alpha
Helix 6
AA6
A
176 185Right-handed alpha
Helix 7
AA7
A
212 219Right-handed alpha
Helix 8
AA8
A
222 231Right-handed alpha
Helix 9
AA9
A
248 256Right-handed alpha
Helix 10
AB1
A
260 282Right-handed alpha
Helix 11
AB2
A
297 305Right-handed alpha
Helix 12
AB3
A
307 316Right-handed alpha
Helix 13
AB4
A
355 363Right-handed alpha
Helix 14
AB5
A
377 413Right-handed alpha
Helix 15
AB6
A
430 459Right-handed alpha
Helix 16
AB7
A
463 467Right-handed 310
Helix 17
AB8
A
471 492Right-handed alpha
Helix 18
AB9
A
496 512Right-handed alpha
Helix 19
AC1
A
513 518Right-handed 310
Helix 20
AC2
A
519 559Right-handed alpha
Helix 21
AC3
A
592 606Right-handed alpha
Helix 22
AC4
A
618 651Right-handed alpha
Helix 23
AC5
A
656 672Right-handed alpha
Helix 24
AC6
B
76 87Right-handed alpha
Helix 25
AC7
B
95 103Right-handed alpha
Helix 26
AC8
B
119 127Right-handed alpha
Helix 27
AC9
B
135 146Right-handed alpha
Helix 28
AD1
B
167 174Right-handed alpha
Helix 29
AD2
B
176 185Right-handed alpha
Helix 30
AD3
B
212 219Right-handed alpha
Helix 31
AD4
B
222 231Right-handed alpha
Helix 32
AD5
B
248 256Right-handed alpha
Helix 33
AD6
B
260 282Right-handed alpha
Helix 34
AD7
B
297 305Right-handed alpha
Helix 35
AD8
B
307 316Right-handed alpha
Helix 36
AD9
B
355 363Right-handed alpha
Helix 37
AE1
B
377 413Right-handed alpha
Helix 38
AE2
B
430 459Right-handed alpha
Helix 39
AE3
B
463 467Right-handed 310
Helix 40
AE4
B
471 492Right-handed alpha
Helix 41
AE5
B
496 512Right-handed alpha
Helix 42
AE6
B
513 518Right-handed 310
Helix 43
AE7
B
519 559Right-handed alpha
Helix 44
AE8
B
592 606Right-handed alpha
Helix 45
AE9
B
618 651Right-handed alpha
Helix 46
AF1
B
656 672Right-handed alpha
Helix 47
AF2
C
76 87Right-handed alpha
Helix 48
AF3
C
95 103Right-handed alpha
Helix 49
AF4
C
119 127Right-handed alpha
Helix 50
AF5
C
135 146Right-handed alpha
Helix 51
AF6
C
167 174Right-handed alpha
Helix 52
AF7
C
176 185Right-handed alpha
Helix 53
AF8
C
212 219Right-handed alpha
Helix 54
AF9
C
222 231Right-handed alpha
Helix 55
AG1
C
248 256Right-handed alpha
Helix 56
AG2
C
260 282Right-handed alpha
Helix 57
AG3
C
297 305Right-handed alpha
Helix 58
AG4
C
307 316Right-handed alpha
Helix 59
AG5
C
355 363Right-handed alpha
Helix 60
AG6
C
377 413Right-handed alpha
Helix 61
AG7
C
430 459Right-handed alpha
Helix 62
AG8
C
463 467Right-handed 310
Helix 63
AG9
C
471 492Right-handed alpha
Helix 64
AH1
C
496 512Right-handed alpha
Helix 65
AH2
C
513 518Right-handed 310
Helix 66
AH3
C
519 559Right-handed alpha
Helix 67
AH4
C
592 606Right-handed alpha
Helix 68
AH5
C
618 651Right-handed alpha
Helix 69
AH6
C
656 672Right-handed alpha
Helix 70
AH7
D
76 87Right-handed alpha
Helix 71
AH8
D
95 103Right-handed alpha
Helix 72
AH9
D
119 127Right-handed alpha
Helix 73
AI1
D
135 146Right-handed alpha
Helix 74
AI2
D
167 174Right-handed alpha
Helix 75
AI3
D
176 185Right-handed alpha
Helix 76
AI4
D
212 219Right-handed alpha
Helix 77
AI5
D
222 231Right-handed alpha
Helix 78
AI6
D
248 256Right-handed alpha
Helix 79
AI7
D
260 282Right-handed alpha
Helix 80
AI8
D
297 305Right-handed alpha
Helix 81
AI9
D
307 316Right-handed alpha
Helix 82
AJ1
D
355 363Right-handed alpha
Helix 83
AJ2
D
377 413Right-handed alpha
Helix 84
AJ3
D
430 459Right-handed alpha
Helix 85
AJ4
D
463 467Right-handed 310
Helix 86
AJ5
D
471 492Right-handed alpha
Helix 87
AJ6
D
496 512Right-handed alpha
Helix 88
AJ7
D
513 518Right-handed 310
Helix 89
AJ8
D
519 559Right-handed alpha
Helix 90
AJ9
D
592 606Right-handed alpha
Helix 91
AK1
D
618 651Right-handed alpha
Helix 92
AK2
D
656 672Right-handed alpha
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There are 4 sheets in PDB entry 6U88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 335first strand
Strand 2
A
338 344anti-parallel
Strand 3
A
700 710anti-parallel
Strand 4
A
687 691anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 335first strand
Strand 2
B
338 344anti-parallel
Strand 3
B
700 710anti-parallel
Strand 4
B
687 691anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 335first strand
Strand 2
C
338 344anti-parallel
Strand 3
C
700 710anti-parallel
Strand 4
C
687 691anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 335first strand
Strand 2
D
338 344anti-parallel
Strand 3
D
700 710anti-parallel
Strand 4
D
687 691anti-parallel
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