Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U8C entry

There are 6 chains in PDB entry 6U8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	GLU 61
B	ALA 4	GLU 61
C	SER 8	CYS 214
D	GLU 4	LYS 231
L	THR 6	CYS 214
H	GLU 4	LYS 231

There are 14 helices in PDB entry 6U8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	42	Right-handed alpha
Helix 2	AA2	B	29	42	Right-handed alpha
Helix 3	AA3	C	80	84	Right-handed 310
Helix 4	AA4	C	124	127	Right-handed 310
Helix 5	AA5	C	183	187	Right-handed alpha
Helix 6	AA6	D	90	94	Right-handed 310
Helix 7	AA7	D	173	175	Right-handed 310
Helix 8	AA8	L	80	84	Right-handed 310
Helix 9	AA9	L	124	127	Right-handed 310
Helix 10	AB1	L	183	187	Right-handed alpha
Helix 11	AB2	H	31	34	Right-handed 310
Helix 12	AB3	H	65	68	Right-handed 310
Helix 13	AB4	H	90	94	Right-handed 310
Helix 14	AB5	H	173	175	Right-handed 310

There are 19 sheets in PDB entry 6U8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	56	60	anti-parallel
Strand 3	A	6	13	parallel
Strand 4	A	17	25	anti-parallel
Strand 5	H	222	228	anti-parallel
Strand 6	H	211	217	anti-parallel
Strand 7	H	168	171	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	56	60	anti-parallel
Strand 3	B	6	13	parallel
Strand 4	B	17	25	anti-parallel
Strand 5	D	222	227	anti-parallel
Strand 6	D	212	217	anti-parallel
Strand 7	D	168	171	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	104	108	parallel
Strand 3	C	86	90	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	46	50	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	72	76	anti-parallel
Strand 3	C	20	24	anti-parallel
Strand 4	L	153	156	parallel
Strand 5	L	145	150	anti-parallel
Strand 6	L	191	197	anti-parallel
Strand 7	L	205	210	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	210	first strand
Strand 2	C	191	197	anti-parallel
Strand 3	C	145	150	anti-parallel
Strand 4	C	154	156	anti-parallel
Strand 5	L	20	25	parallel
Strand 6	L	71	76	anti-parallel
Strand 7	L	63	64	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	124	128	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	35	42	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	61	63	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	124	128	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	119	120	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	152	162	anti-parallel
Strand 3	D	193	202	anti-parallel
Strand 4	D	180	182	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	152	162	anti-parallel
Strand 3	D	193	202	anti-parallel
Strand 4	D	186	187	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	45	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	99	100	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	124	128	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	124	128	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	119	120	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	141	first strand
Strand 2	H	152	162	anti-parallel
Strand 3	H	193	202	anti-parallel
Strand 4	H	180	182	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	141	first strand
Strand 2	H	152	162	anti-parallel
Strand 3	H	193	202	anti-parallel
Strand 4	H	186	187	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8C