Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U8J entry

There are 4 chains in PDB entry 6U8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	LEU 371
B	ALA 0	LEU 371
C	ALA 0	LYS 372
D	ALA 0	ARG 181

There are116 helices in PDB entry 6U8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	35	Right-handed alpha
Helix 2	AA2	A	38	57	Right-handed alpha
Helix 3	AA3	A	74	93	Right-handed alpha
Helix 4	AA4	A	127	143	Right-handed alpha
Helix 5	AA5	A	157	162	Right-handed alpha
Helix 6	AA6	A	163	165	Right-handed 310
Helix 7	AA7	A	172	175	Right-handed 310
Helix 8	AA8	A	177	185	Right-handed alpha
Helix 9	AA9	A	201	212	Right-handed alpha
Helix 10	AB1	A	251	265	Right-handed alpha
Helix 11	AB2	A	282	287	Right-handed 310
Helix 12	AB3	A	289	291	Right-handed 310
Helix 13	AB4	A	292	306	Right-handed alpha
Helix 14	AB5	A	329	338	Right-handed 310
Helix 15	AB6	A	350	371	Right-handed alpha
Helix 16	AB7	B	27	35	Right-handed alpha
Helix 17	AB8	B	38	57	Right-handed alpha
Helix 18	AB9	B	74	93	Right-handed alpha
Helix 19	AC1	B	127	143	Right-handed alpha
Helix 20	AC2	B	157	162	Right-handed alpha
Helix 21	AC3	B	172	175	Right-handed 310
Helix 22	AC4	B	177	187	Right-handed alpha
Helix 23	AC5	B	201	212	Right-handed alpha
Helix 24	AC6	B	251	265	Right-handed alpha
Helix 25	AC7	B	282	287	Right-handed 310
Helix 26	AC8	B	289	291	Right-handed 310
Helix 27	AC9	B	292	306	Right-handed alpha
Helix 28	AD1	B	333	338	Right-handed 310
Helix 29	AD2	B	350	370	Right-handed alpha
Helix 30	AD3	C	27	35	Right-handed alpha
Helix 31	AD4	C	38	57	Right-handed alpha
Helix 32	AD5	C	74	93	Right-handed alpha
Helix 33	AD6	C	127	143	Right-handed alpha
Helix 34	AD7	C	157	162	Right-handed alpha
Helix 35	AD8	C	172	175	Right-handed 310
Helix 36	AD9	C	177	187	Right-handed alpha
Helix 37	AE1	C	201	212	Right-handed alpha
Helix 38	AE2	C	251	265	Right-handed alpha
Helix 39	AE3	C	282	287	Right-handed 310
Helix 40	AE4	C	289	291	Right-handed 310
Helix 41	AE5	C	292	306	Right-handed alpha
Helix 42	AE6	C	329	338	Right-handed 310
Helix 43	AE7	C	350	372	Right-handed alpha
Helix 44	AE8	D	27	35	Right-handed alpha
Helix 45	AE9	D	38	57	Right-handed alpha
Helix 46	AF1	D	74	93	Right-handed alpha
Helix 47	AF2	D	127	143	Right-handed alpha
Helix 48	AF3	D	157	162	Right-handed alpha
Helix 49	AF4	D	163	165	Right-handed 310
Helix 50	AF5	D	172	175	Right-handed 310
Helix 51	AF6	D	177	187	Right-handed alpha
Helix 52	AF7	D	201	212	Right-handed alpha
Helix 53	AF8	D	251	265	Right-handed alpha
Helix 54	AF9	D	282	287	Right-handed 310
Helix 55	AG1	D	289	291	Right-handed 310
Helix 56	AG2	D	292	306	Right-handed alpha
Helix 57	AG3	D	333	338	Right-handed 310
Helix 58	AG4	D	350	371	Right-handed alpha
Helix 59	AG5	E	27	35	Right-handed alpha
Helix 60	AG6	E	38	57	Right-handed alpha
Helix 61	AG7	E	74	93	Right-handed alpha
Helix 62	AG8	E	127	143	Right-handed alpha
Helix 63	AG9	E	157	162	Right-handed alpha
Helix 64	AH1	E	172	175	Right-handed 310
Helix 65	AH2	E	177	185	Right-handed alpha
Helix 66	AH3	E	201	212	Right-handed alpha
Helix 67	AH4	E	251	265	Right-handed alpha
Helix 68	AH5	E	282	287	Right-handed 310
Helix 69	AH6	E	289	291	Right-handed 310
Helix 70	AH7	E	292	306	Right-handed alpha
Helix 71	AH8	E	333	338	Right-handed 310
Helix 72	AH9	E	350	371	Right-handed alpha
Helix 73	AI1	F	27	35	Right-handed alpha
Helix 74	AI2	F	38	57	Right-handed alpha
Helix 75	AI3	F	74	93	Right-handed alpha
Helix 76	AI4	F	127	143	Right-handed alpha
Helix 77	AI5	F	157	162	Right-handed alpha
Helix 78	AI6	F	163	165	Right-handed 310
Helix 79	AI7	F	172	175	Right-handed 310
Helix 80	AI8	F	177	185	Right-handed alpha
Helix 81	AI9	F	201	213	Right-handed alpha
Helix 82	AJ1	F	251	265	Right-handed alpha
Helix 83	AJ2	F	282	287	Right-handed 310
Helix 84	AJ3	F	289	291	Right-handed 310
Helix 85	AJ4	F	292	306	Right-handed alpha
Helix 86	AJ5	F	329	333	Right-handed 310
Helix 87	AJ6	F	334	338	Right-handed 310
Helix 88	AJ7	F	350	368	Right-handed alpha
Helix 89	AJ8	G	27	35	Right-handed alpha
Helix 90	AJ9	G	38	57	Right-handed alpha
Helix 91	AK1	G	74	93	Right-handed alpha
Helix 92	AK2	G	127	143	Right-handed alpha
Helix 93	AK3	G	157	162	Right-handed alpha
Helix 94	AK4	G	163	165	Right-handed 310
Helix 95	AK5	G	172	175	Right-handed 310
Helix 96	AK6	G	177	185	Right-handed alpha
Helix 97	AK7	G	201	213	Right-handed alpha
Helix 98	AK8	G	251	265	Right-handed alpha
Helix 99	AK9	G	282	287	Right-handed 310
Helix 100	AL1	G	289	291	Right-handed 310
Helix 101	AL2	G	292	306	Right-handed alpha
Helix 102	AL3	G	333	338	Right-handed 310
Helix 103	AL4	G	350	370	Right-handed alpha
Helix 104	AL5	H	27	35	Right-handed alpha
Helix 105	AL6	H	38	57	Right-handed alpha
Helix 106	AL7	H	74	92	Right-handed alpha
Helix 107	AL8	H	127	143	Right-handed alpha
Helix 108	AL9	H	157	162	Right-handed alpha
Helix 109	AM1	H	172	175	Right-handed 310
Helix 110	AM2	H	177	185	Right-handed alpha
Helix 111	AM3	H	201	212	Right-handed alpha
Helix 112	AM4	H	251	265	Right-handed alpha
Helix 113	AM5	H	282	287	Right-handed 310
Helix 114	AM6	H	289	291	Right-handed 310
Helix 115	AM7	H	292	306	Right-handed alpha
Helix 116	AM8	H	350	370	Right-handed alpha

There are 16 sheets in PDB entry 6U8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	C	226	231	anti-parallel
Strand 4	C	216	220	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	68	first strand
Strand 2	A	96	101	parallel
Strand 3	A	148	152	parallel
Strand 4	A	167	170	parallel
Strand 5	A	191	194	parallel
Strand 6	A	238	241	parallel
Strand 7	A	277	280	parallel
Strand 8	A	311	317	parallel
Strand 9	A	63	68	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	220	first strand
Strand 2	A	226	231	anti-parallel
Strand 3	C	19	23	anti-parallel
Strand 4	C	3	4	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	D	226	231	anti-parallel
Strand 4	D	216	220	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	96	101	parallel
Strand 3	B	148	152	parallel
Strand 4	B	165	170	parallel
Strand 5	B	191	194	parallel
Strand 6	B	238	241	parallel
Strand 7	B	277	280	parallel
Strand 8	B	311	317	parallel
Strand 9	B	63	68	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	220	first strand
Strand 2	B	226	231	anti-parallel
Strand 3	D	19	23	anti-parallel
Strand 4	D	3	4	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	68	first strand
Strand 2	C	96	101	parallel
Strand 3	C	148	152	parallel
Strand 4	C	165	170	parallel
Strand 5	C	191	194	parallel
Strand 6	C	238	241	parallel
Strand 7	C	277	280	parallel
Strand 8	C	311	317	parallel
Strand 9	C	63	68	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	68	first strand
Strand 2	D	96	101	parallel
Strand 3	D	148	152	parallel
Strand 4	D	167	170	parallel
Strand 5	D	191	194	parallel
Strand 6	D	238	241	parallel
Strand 7	D	277	280	parallel
Strand 8	D	311	317	parallel
Strand 9	D	63	68	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	19	23	anti-parallel
Strand 3	G	226	231	anti-parallel
Strand 4	G	216	220	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	68	first strand
Strand 2	E	96	101	parallel
Strand 3	E	148	152	parallel
Strand 4	E	165	170	parallel
Strand 5	E	191	194	parallel
Strand 6	E	238	241	parallel
Strand 7	E	277	280	parallel
Strand 8	E	311	317	parallel
Strand 9	E	63	68	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	220	first strand
Strand 2	E	226	231	anti-parallel
Strand 3	G	19	23	anti-parallel
Strand 4	G	3	4	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	19	23	anti-parallel
Strand 3	H	226	231	anti-parallel
Strand 4	H	216	220	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	68	first strand
Strand 2	F	96	101	parallel
Strand 3	F	148	152	parallel
Strand 4	F	167	170	parallel
Strand 5	F	191	194	parallel
Strand 6	F	238	241	parallel
Strand 7	F	277	280	parallel
Strand 8	F	311	317	parallel
Strand 9	F	63	68	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	216	220	first strand
Strand 2	F	226	231	anti-parallel
Strand 3	H	19	23	anti-parallel
Strand 4	H	3	4	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	68	first strand
Strand 2	G	96	101	parallel
Strand 3	G	148	152	parallel
Strand 4	G	167	170	parallel
Strand 5	G	191	194	parallel
Strand 6	G	238	241	parallel
Strand 7	G	277	280	parallel
Strand 8	G	311	317	parallel
Strand 9	G	63	68	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	68	first strand
Strand 2	H	96	101	parallel
Strand 3	H	148	152	parallel
Strand 4	H	167	170	parallel
Strand 5	H	191	194	parallel
Strand 6	H	238	241	parallel
Strand 7	H	277	280	parallel
Strand 8	H	311	317	parallel
Strand 9	H	63	68	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8J