Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U8Q entry

There are 16 chains in PDB entry 6U8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ASP 270
B	PHE 1	ASP 270
E	A 15	G 39
F	C -1	A 21
C	PHE 1	ASP 270
D	LEU 2	ASP 270
G	A 15	G 39
H	C -1	A 21
I	CYS 56	ALA 276
J	CYS 56	ALA 276
K	CYS 56	GLN 209
L	CYS 56	GLN 209
M	CYS 56	ASP 270
N	CYS 56	THR 210
O	CYS 56	THR 210
P	CYS 56	ILE 268

There are 85 helices in PDB entry 6U8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	16	Right-handed alpha
Helix 2	AA2	A	18	27	Right-handed alpha
Helix 3	AA3	A	29	40	Right-handed alpha
Helix 4	AA4	A	93	108	Right-handed alpha
Helix 5	AA5	A	119	122	Right-handed 310
Helix 6	AA6	A	123	134	Right-handed alpha
Helix 7	AA7	A	148	166	Right-handed alpha
Helix 8	AA8	A	171	186	Right-handed alpha
Helix 9	AA9	A	195	219	Right-handed alpha
Helix 10	AB1	B	4	15	Right-handed alpha
Helix 11	AB2	B	18	27	Right-handed alpha
Helix 12	AB3	B	29	40	Right-handed alpha
Helix 13	AB4	B	93	108	Right-handed alpha
Helix 14	AB5	B	119	122	Right-handed 310
Helix 15	AB6	B	123	134	Right-handed alpha
Helix 16	AB7	B	147	166	Right-handed alpha
Helix 17	AB8	B	171	186	Right-handed alpha
Helix 18	AB9	B	196	221	Right-handed alpha
Helix 19	AC1	B	261	263	Right-handed 310
Helix 20	AC2	C	2	15	Right-handed alpha
Helix 21	AC3	C	18	27	Right-handed alpha
Helix 22	AC4	C	29	38	Right-handed alpha
Helix 23	AC5	C	93	108	Right-handed alpha
Helix 24	AC6	C	119	122	Right-handed 310
Helix 25	AC7	C	123	134	Right-handed alpha
Helix 26	AC8	C	148	166	Right-handed alpha
Helix 27	AC9	C	167	169	Right-handed 310
Helix 28	AD1	C	171	186	Right-handed alpha
Helix 29	AD2	C	195	210	Right-handed alpha
Helix 30	AD3	C	211	219	Right-handed alpha
Helix 31	AD4	D	4	15	Right-handed alpha
Helix 32	AD5	D	18	26	Right-handed alpha
Helix 33	AD6	D	29	39	Right-handed alpha
Helix 34	AD7	D	93	108	Right-handed alpha
Helix 35	AD8	D	123	134	Right-handed alpha
Helix 36	AD9	D	146	166	Right-handed alpha
Helix 37	AE1	D	171	186	Right-handed alpha
Helix 38	AE2	D	196	221	Right-handed alpha
Helix 39	AE3	I	93	106	Right-handed alpha
Helix 40	AE4	I	124	134	Right-handed alpha
Helix 41	AE5	I	154	166	Right-handed alpha
Helix 42	AE6	I	167	169	Right-handed 310
Helix 43	AE7	I	171	186	Right-handed alpha
Helix 44	AE8	I	195	219	Right-handed alpha
Helix 45	AE9	J	93	106	Right-handed alpha
Helix 46	AF1	J	124	134	Right-handed alpha
Helix 47	AF2	J	154	166	Right-handed alpha
Helix 48	AF3	J	171	187	Right-handed alpha
Helix 49	AF4	J	195	212	Right-handed alpha
Helix 50	AF5	J	212	221	Right-handed alpha
Helix 51	AF6	J	270	275	Right-handed 310
Helix 52	AF7	K	93	108	Right-handed alpha
Helix 53	AF8	K	123	134	Right-handed alpha
Helix 54	AF9	K	150	166	Right-handed alpha
Helix 55	AG1	K	171	187	Right-handed alpha
Helix 56	AG2	K	195	209	Right-handed alpha
Helix 57	AG3	L	93	108	Right-handed alpha
Helix 58	AG4	L	123	134	Right-handed alpha
Helix 59	AG5	L	150	166	Right-handed alpha
Helix 60	AG6	L	167	169	Right-handed 310
Helix 61	AG7	L	171	187	Right-handed alpha
Helix 62	AG8	L	195	209	Right-handed alpha
Helix 63	AG9	M	94	105	Right-handed alpha
Helix 64	AH1	M	123	134	Right-handed alpha
Helix 65	AH2	M	151	157	Right-handed alpha
Helix 66	AH3	M	171	185	Right-handed alpha
Helix 67	AH4	M	195	208	Right-handed alpha
Helix 68	AH5	N	93	106	Right-handed alpha
Helix 69	AH6	N	123	132	Right-handed alpha
Helix 70	AH7	N	155	165	Right-handed alpha
Helix 71	AH8	N	166	169	Right-handed 310
Helix 72	AH9	N	171	186	Right-handed alpha
Helix 73	AI1	N	195	210	Right-handed alpha
Helix 74	AI2	O	93	106	Right-handed alpha
Helix 75	AI3	O	118	122	Right-handed 310
Helix 76	AI4	O	123	132	Right-handed alpha
Helix 77	AI5	O	156	166	Right-handed alpha
Helix 78	AI6	O	167	169	Right-handed 310
Helix 79	AI7	O	171	186	Right-handed alpha
Helix 80	AI8	O	195	210	Right-handed alpha
Helix 81	AI9	P	94	106	Right-handed alpha
Helix 82	AJ1	P	123	134	Right-handed alpha
Helix 83	AJ2	P	151	157	Right-handed alpha
Helix 84	AJ3	P	171	186	Right-handed alpha
Helix 85	AJ4	P	195	208	Right-handed alpha

There are 22 sheets in PDB entry 6U8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	71	78	anti-parallel
Strand 3	A	60	68	anti-parallel
Strand 4	A	112	114	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	261	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	235	243	anti-parallel
Strand 4	A	224	228	anti-parallel
Strand 5	A	265	268	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	89	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	61	68	anti-parallel
Strand 4	B	112	115	parallel
Strand 5	B	136	139	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	249	252	anti-parallel
Strand 3	B	236	243	anti-parallel
Strand 4	B	224	227	anti-parallel
Strand 5	B	265	268	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	88	first strand
Strand 2	C	71	78	anti-parallel
Strand 3	C	60	68	anti-parallel
Strand 4	C	112	115	parallel
Strand 5	C	136	139	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	261	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	235	243	anti-parallel
Strand 4	C	224	228	anti-parallel
Strand 5	C	265	268	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	89	first strand
Strand 2	D	71	78	anti-parallel
Strand 3	D	60	68	anti-parallel
Strand 4	D	112	115	parallel
Strand 5	D	136	139	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	228	first strand
Strand 2	D	235	243	anti-parallel
Strand 3	D	248	252	anti-parallel
Strand 4	D	257	261	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	89	first strand
Strand 2	I	71	78	anti-parallel
Strand 3	I	60	68	anti-parallel
Strand 4	I	112	114	parallel
Strand 5	I	136	138	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	258	261	first strand
Strand 2	I	248	252	anti-parallel
Strand 3	I	236	244	anti-parallel
Strand 4	I	224	227	anti-parallel
Strand 5	I	265	266	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	84	89	first strand
Strand 2	J	71	78	anti-parallel
Strand 3	J	60	68	anti-parallel
Strand 4	J	112	114	parallel
Strand 5	J	136	138	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	257	261	first strand
Strand 2	J	248	252	anti-parallel
Strand 3	J	236	244	anti-parallel
Strand 4	J	224	227	anti-parallel
Strand 5	J	265	268	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	89	first strand
Strand 2	K	71	78	anti-parallel
Strand 3	K	60	68	anti-parallel
Strand 4	K	112	114	parallel
Strand 5	K	136	138	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	84	89	first strand
Strand 2	L	71	78	anti-parallel
Strand 3	L	60	68	anti-parallel
Strand 4	L	112	114	parallel
Strand 5	L	136	138	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	85	88	first strand
Strand 2	M	72	78	anti-parallel
Strand 3	M	60	67	anti-parallel
Strand 4	M	112	114	parallel
Strand 5	M	136	138	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	257	261	first strand
Strand 2	M	248	252	anti-parallel
Strand 3	M	235	243	anti-parallel
Strand 4	M	224	228	anti-parallel
Strand 5	M	265	267	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	61	68	first strand
Strand 2	N	71	78	anti-parallel
Strand 3	N	84	89	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	112	113	first strand
Strand 2	N	136	137	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	84	89	first strand
Strand 2	O	71	78	anti-parallel
Strand 3	O	60	68	anti-parallel
Strand 4	O	112	114	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	61	68	first strand
Strand 2	P	71	78	anti-parallel
Strand 3	P	85	88	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	112	114	first strand
Strand 2	P	136	138	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	257	261	first strand
Strand 2	P	248	252	anti-parallel
Strand 3	P	236	243	anti-parallel
Strand 4	P	224	227	anti-parallel
Strand 5	P	265	267	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8Q