Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U8T entry

There are 4 chains in PDB entry 6U8T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3696	ALA 3916
C	SER 3696	ALA 3916
B	SER 3696	ALA 3916
D	MSE 3697	GLU 3917

There are 26 helices in PDB entry 6U8T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3714	3745	Right-handed alpha
Helix 2	AA2	A	3766	3783	Right-handed alpha
Helix 3	AA3	A	3785	3800	Right-handed alpha
Helix 4	AA4	A	3827	3836	Right-handed alpha
Helix 5	AA5	A	3881	3892	Right-handed alpha
Helix 6	AA6	A	3892	3897	Right-handed alpha
Helix 7	AA7	C	3714	3747	Right-handed alpha
Helix 8	AA8	C	3766	3783	Right-handed alpha
Helix 9	AA9	C	3785	3800	Right-handed alpha
Helix 10	AB1	C	3827	3836	Right-handed alpha
Helix 11	AB2	C	3881	3892	Right-handed alpha
Helix 12	AB3	C	3892	3897	Right-handed alpha
Helix 13	AB4	B	3698	3703	Right-handed alpha
Helix 14	AB5	B	3714	3747	Right-handed alpha
Helix 15	AB6	B	3750	3755	Right-handed 310
Helix 16	AB7	B	3766	3783	Right-handed alpha
Helix 17	AB8	B	3785	3800	Right-handed alpha
Helix 18	AB9	B	3827	3836	Right-handed alpha
Helix 19	AC1	B	3881	3892	Right-handed alpha
Helix 20	AC2	B	3892	3897	Right-handed alpha
Helix 21	AC3	D	3714	3745	Right-handed alpha
Helix 22	AC4	D	3766	3782	Right-handed alpha
Helix 23	AC5	D	3785	3800	Right-handed alpha
Helix 24	AC6	D	3827	3836	Right-handed alpha
Helix 25	AC7	D	3881	3892	Right-handed alpha
Helix 26	AC8	D	3892	3897	Right-handed alpha

There are 8 sheets in PDB entry 6U8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3706	3710	first strand
Strand 2	A	3875	3879	anti-parallel
Strand 3	A	3866	3871	anti-parallel
Strand 4	A	3855	3863	anti-parallel
Strand 5	B	3842	3850	anti-parallel
Strand 6	A	3907	3914	anti-parallel
Strand 7	B	3817	3822	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3806	3809	first strand
Strand 2	A	3812	3815	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3817	3822	first strand
Strand 2	B	3907	3914	anti-parallel
Strand 3	A	3842	3850	anti-parallel
Strand 4	B	3855	3863	anti-parallel
Strand 5	B	3866	3871	anti-parallel
Strand 6	B	3875	3879	anti-parallel
Strand 7	B	3706	3710	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3706	3710	first strand
Strand 2	C	3875	3879	anti-parallel
Strand 3	C	3866	3871	anti-parallel
Strand 4	C	3855	3863	anti-parallel
Strand 5	D	3842	3850	anti-parallel
Strand 6	C	3907	3914	anti-parallel
Strand 7	D	3817	3822	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3806	3808	first strand
Strand 2	C	3813	3815	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3817	3820	first strand
Strand 2	D	3909	3914	anti-parallel
Strand 3	C	3842	3850	anti-parallel
Strand 4	D	3855	3863	anti-parallel
Strand 5	D	3866	3871	anti-parallel
Strand 6	D	3875	3879	anti-parallel
Strand 7	D	3706	3710	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3806	3809	first strand
Strand 2	B	3812	3815	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3806	3809	first strand
Strand 2	D	3812	3815	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U8T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8T