Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U8Y entry

There are 26 chains in PDB entry 6U8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 7	PHE 167
B	VAL 4	GLY 82
C	SER 5	LYS 116
D	CYS 3	TRP 94
E	MET 4	GLU 235
G	ILE 2	ARG 111
H	SER 2	LEU 488
X	ASN 2	MET 616
J	PHE 7	LEU 183
K	GLU 4	VAL 173
L	TYR 19	ARG 391
M	ILE 2	SER 308
N	PHE 6	LEU 186
a	ILE 7	PHE 167
b	VAL 4	GLY 82
c	SER 5	LYS 116
d	CYS 3	TRP 94
e	MET 4	GLU 235
g	ILE 2	ARG 111
h	SER 2	LEU 488
x	ASN 2	MET 616
j	PHE 7	LEU 183
k	GLU 4	VAL 173
l	TYR 19	ARG 391
m	ILE 2	SER 308
n	PHE 6	LEU 186

There are265 helices in PDB entry 6U8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	25	Right-handed alpha
Helix 2	AA2	A	32	47	Right-handed alpha
Helix 3	AA3	A	60	70	Right-handed alpha
Helix 4	AA4	A	70	88	Right-handed alpha
Helix 5	AA5	A	110	122	Right-handed alpha
Helix 6	AA6	A	159	164	Right-handed alpha
Helix 7	AA7	B	5	19	Right-handed alpha
Helix 8	AA8	B	19	24	Right-handed alpha
Helix 9	AA9	B	29	54	Right-handed alpha
Helix 10	AB1	B	61	77	Right-handed alpha
Helix 11	AB2	C	6	28	Right-handed alpha
Helix 12	AB3	C	31	43	Right-handed alpha
Helix 13	AB4	C	44	58	Right-handed alpha
Helix 14	AB5	C	65	95	Right-handed alpha
Helix 15	AB6	C	106	114	Right-handed alpha
Helix 16	AB7	D	5	21	Right-handed alpha
Helix 17	AB8	D	27	49	Right-handed alpha
Helix 18	AB9	D	51	63	Right-handed alpha
Helix 19	AC1	D	70	75	Right-handed alpha
Helix 20	AC2	E	5	25	Right-handed alpha
Helix 21	AC3	E	37	44	Right-handed alpha
Helix 22	AC4	E	54	61	Right-handed alpha
Helix 23	AC5	E	66	85	Right-handed alpha
Helix 24	AC6	E	102	123	Right-handed alpha
Helix 25	AC7	E	130	147	Right-handed alpha
Helix 26	AC8	E	159	176	Right-handed alpha
Helix 27	AC9	E	177	180	Right-handed 310
Helix 28	AD1	E	202	206	Right-handed 310
Helix 29	AD2	E	208	232	Right-handed alpha
Helix 30	AD3	G	3	22	Right-handed alpha
Helix 31	AD4	G	25	46	Right-handed alpha
Helix 32	AD5	G	71	80	Right-handed alpha
Helix 33	AD6	G	80	101	Right-handed alpha
Helix 34	AD7	H	2	5	Right-handed 310
Helix 35	AD8	H	6	19	Right-handed alpha
Helix 36	AD9	H	31	53	Right-handed alpha
Helix 37	AE1	H	77	96	Right-handed alpha
Helix 38	AE2	H	109	125	Right-handed alpha
Helix 39	AE3	H	129	148	Right-handed alpha
Helix 40	AE4	H	156	185	Right-handed alpha
Helix 41	AE5	H	189	195	Right-handed alpha
Helix 42	AE6	H	204	220	Right-handed alpha
Helix 43	AE7	H	228	233	Right-handed alpha
Helix 44	AE8	H	237	247	Right-handed alpha
Helix 45	AE9	H	247	261	Right-handed alpha
Helix 46	AF1	H	268	291	Right-handed alpha
Helix 47	AF2	H	296	317	Right-handed alpha
Helix 48	AF3	H	327	352	Right-handed alpha
Helix 49	AF4	H	356	360	Right-handed 310
Helix 50	AF5	H	369	383	Right-handed alpha
Helix 51	AF6	H	387	400	Right-handed alpha
Helix 52	AF7	H	411	420	Right-handed alpha
Helix 53	AF8	H	420	425	Right-handed alpha
Helix 54	AF9	H	427	432	Right-handed alpha
Helix 55	AG1	H	447	454	Right-handed alpha
Helix 56	AG2	H	463	473	Right-handed alpha
Helix 57	AG3	H	480	486	Right-handed alpha
Helix 58	AG4	X	5	18	Right-handed alpha
Helix 59	AG5	X	28	33	Right-handed alpha
Helix 60	AG6	X	36	45	Right-handed alpha
Helix 61	AG7	X	46	50	Right-handed 310
Helix 62	AG8	X	72	89	Right-handed alpha
Helix 63	AG9	X	100	105	Right-handed alpha
Helix 64	AH1	X	105	116	Right-handed alpha
Helix 65	AH2	X	122	139	Right-handed alpha
Helix 66	AH3	X	142	170	Right-handed alpha
Helix 67	AH4	X	178	186	Right-handed alpha
Helix 68	AH5	X	203	214	Right-handed alpha
Helix 69	AH6	X	226	231	Right-handed alpha
Helix 70	AH7	X	235	245	Right-handed alpha
Helix 71	AH8	X	247	261	Right-handed alpha
Helix 72	AH9	X	263	268	Right-handed alpha
Helix 73	AI1	X	276	297	Right-handed alpha
Helix 74	AI2	X	304	312	Right-handed alpha
Helix 75	AI3	X	314	322	Right-handed alpha
Helix 76	AI4	X	328	357	Right-handed alpha
Helix 77	AI5	X	373	386	Right-handed alpha
Helix 78	AI6	X	393	408	Right-handed alpha
Helix 79	AI7	X	411	433	Right-handed alpha
Helix 80	AI8	X	452	471	Right-handed alpha
Helix 81	AI9	X	474	482	Right-handed alpha
Helix 82	AJ1	X	505	522	Right-handed alpha
Helix 83	AJ2	X	557	564	Right-handed alpha
Helix 84	AJ3	X	566	570	Right-handed 310
Helix 85	AJ4	X	572	594	Right-handed alpha
Helix 86	AJ5	X	598	616	Right-handed alpha
Helix 87	AJ6	J	8	16	Right-handed alpha
Helix 88	AJ7	J	34	38	Right-handed 310
Helix 89	AJ8	J	43	47	Right-handed 310
Helix 90	AJ9	J	67	79	Right-handed alpha
Helix 91	AK1	J	99	103	Right-handed 310
Helix 92	AK2	J	109	113	Right-handed 310
Helix 93	AK3	J	126	144	Right-handed alpha
Helix 94	AK4	J	150	155	Right-handed alpha
Helix 95	AK5	J	155	167	Right-handed alpha
Helix 96	AK6	J	170	175	Right-handed alpha
Helix 97	AK7	K	5	16	Right-handed alpha
Helix 98	AK8	K	35	39	Right-handed 310
Helix 99	AK9	K	42	50	Right-handed alpha
Helix 100	AL1	K	106	109	Right-handed 310
Helix 101	AL2	K	110	119	Right-handed alpha
Helix 102	AL3	K	154	159	Right-handed alpha
Helix 103	AL4	L	81	85	Right-handed 310
Helix 104	AL5	L	90	105	Right-handed alpha
Helix 105	AL6	L	109	137	Right-handed alpha
Helix 106	AL7	L	142	163	Right-handed alpha
Helix 107	AL8	L	183	201	Right-handed alpha
Helix 108	AL9	L	204	209	Right-handed alpha
Helix 109	AM1	L	213	218	Right-handed alpha
Helix 110	AM2	L	247	252	Right-handed alpha
Helix 111	AM3	L	273	297	Right-handed alpha
Helix 112	AM4	L	307	311	Right-handed 310
Helix 113	AM5	L	371	374	Right-handed 310
Helix 114	AM6	L	375	382	Right-handed alpha
Helix 115	AM7	L	385	389	Right-handed 310
Helix 116	AM8	M	3	33	Right-handed alpha
Helix 117	AM9	M	42	52	Right-handed alpha
Helix 118	AN1	M	61	80	Right-handed alpha
Helix 119	AN2	M	95	105	Right-handed alpha
Helix 120	AN3	M	105	113	Right-handed alpha
Helix 121	AN4	M	119	136	Right-handed alpha
Helix 122	AN5	M	136	152	Right-handed alpha
Helix 123	AN6	M	156	166	Right-handed alpha
Helix 124	AN7	M	172	191	Right-handed alpha
Helix 125	AN8	M	192	196	Right-handed 310
Helix 126	AN9	M	206	210	Right-handed 310
Helix 127	AO1	M	213	240	Right-handed alpha
Helix 128	AO2	M	252	277	Right-handed alpha
Helix 129	AO3	M	284	307	Right-handed alpha
Helix 130	AO4	N	21	31	Right-handed 310
Helix 131	AO5	N	66	70	Right-handed 310
Helix 132	AO6	N	124	132	Right-handed 310
Helix 133	AO7	N	137	144	Right-handed 310
Helix 134	AO8	a	8	25	Right-handed alpha
Helix 135	AO9	a	32	47	Right-handed alpha
Helix 136	AP1	a	60	70	Right-handed alpha
Helix 137	AP2	a	70	88	Right-handed alpha
Helix 138	AP3	a	110	122	Right-handed alpha
Helix 139	AP4	a	159	164	Right-handed alpha
Helix 140	AP5	b	5	19	Right-handed alpha
Helix 141	AP6	b	19	24	Right-handed alpha
Helix 142	AP7	b	29	54	Right-handed alpha
Helix 143	AP8	b	61	77	Right-handed alpha
Helix 144	AP9	c	6	28	Right-handed alpha
Helix 145	AQ1	c	31	43	Right-handed alpha
Helix 146	AQ2	c	44	58	Right-handed alpha
Helix 147	AQ3	c	65	95	Right-handed alpha
Helix 148	AQ4	c	106	114	Right-handed alpha
Helix 149	AQ5	d	5	21	Right-handed alpha
Helix 150	AQ6	d	27	49	Right-handed alpha
Helix 151	AQ7	d	51	63	Right-handed alpha
Helix 152	AQ8	d	70	75	Right-handed alpha
Helix 153	AQ9	e	5	24	Right-handed alpha
Helix 154	AR1	e	37	44	Right-handed alpha
Helix 155	AR2	e	54	61	Right-handed alpha
Helix 156	AR3	e	66	85	Right-handed alpha
Helix 157	AR4	e	102	123	Right-handed alpha
Helix 158	AR5	e	130	147	Right-handed alpha
Helix 159	AR6	e	159	176	Right-handed alpha
Helix 160	AR7	e	177	180	Right-handed 310
Helix 161	AR8	e	208	232	Right-handed alpha
Helix 162	AR9	g	3	22	Right-handed alpha
Helix 163	AS1	g	25	46	Right-handed alpha
Helix 164	AS2	g	71	80	Right-handed alpha
Helix 165	AS3	g	80	101	Right-handed alpha
Helix 166	AS4	h	2	5	Right-handed 310
Helix 167	AS5	h	6	19	Right-handed alpha
Helix 168	AS6	h	31	53	Right-handed alpha
Helix 169	AS7	h	77	96	Right-handed alpha
Helix 170	AS8	h	109	125	Right-handed alpha
Helix 171	AS9	h	129	148	Right-handed alpha
Helix 172	AT1	h	156	185	Right-handed alpha
Helix 173	AT2	h	189	195	Right-handed alpha
Helix 174	AT3	h	204	220	Right-handed alpha
Helix 175	AT4	h	228	233	Right-handed alpha
Helix 176	AT5	h	237	247	Right-handed alpha
Helix 177	AT6	h	247	261	Right-handed alpha
Helix 178	AT7	h	268	291	Right-handed alpha
Helix 179	AT8	h	296	317	Right-handed alpha
Helix 180	AT9	h	327	352	Right-handed alpha
Helix 181	AU1	h	356	360	Right-handed 310
Helix 182	AU2	h	369	383	Right-handed alpha
Helix 183	AU3	h	387	400	Right-handed alpha
Helix 184	AU4	h	411	420	Right-handed alpha
Helix 185	AU5	h	420	425	Right-handed alpha
Helix 186	AU6	h	427	432	Right-handed alpha
Helix 187	AU7	h	447	454	Right-handed alpha
Helix 188	AU8	h	463	473	Right-handed alpha
Helix 189	AU9	h	480	486	Right-handed alpha
Helix 190	AV1	x	5	18	Right-handed alpha
Helix 191	AV2	x	28	33	Right-handed alpha
Helix 192	AV3	x	36	45	Right-handed alpha
Helix 193	AV4	x	46	50	Right-handed 310
Helix 194	AV5	x	72	89	Right-handed alpha
Helix 195	AV6	x	100	105	Right-handed alpha
Helix 196	AV7	x	105	116	Right-handed alpha
Helix 197	AV8	x	122	139	Right-handed alpha
Helix 198	AV9	x	142	170	Right-handed alpha
Helix 199	AW1	x	178	186	Right-handed alpha
Helix 200	AW2	x	203	214	Right-handed alpha
Helix 201	AW3	x	226	231	Right-handed alpha
Helix 202	AW4	x	235	245	Right-handed alpha
Helix 203	AW5	x	247	261	Right-handed alpha
Helix 204	AW6	x	263	268	Right-handed alpha
Helix 205	AW7	x	276	297	Right-handed alpha
Helix 206	AW8	x	304	312	Right-handed alpha
Helix 207	AW9	x	314	322	Right-handed alpha
Helix 208	AX1	x	328	357	Right-handed alpha
Helix 209	AX2	x	373	386	Right-handed alpha
Helix 210	AX3	x	393	408	Right-handed alpha
Helix 211	AX4	x	411	433	Right-handed alpha
Helix 212	AX5	x	452	471	Right-handed alpha
Helix 213	AX6	x	474	482	Right-handed alpha
Helix 214	AX7	x	505	522	Right-handed alpha
Helix 215	AX8	x	557	564	Right-handed alpha
Helix 216	AX9	x	566	570	Right-handed 310
Helix 217	AY1	x	572	594	Right-handed alpha
Helix 218	AY2	x	598	616	Right-handed alpha
Helix 219	AY3	j	8	16	Right-handed alpha
Helix 220	AY4	j	34	38	Right-handed 310
Helix 221	AY5	j	43	47	Right-handed 310
Helix 222	AY6	j	67	79	Right-handed alpha
Helix 223	AY7	j	99	103	Right-handed 310
Helix 224	AY8	j	109	113	Right-handed 310
Helix 225	AY9	j	126	144	Right-handed alpha
Helix 226	AZ1	j	150	155	Right-handed alpha
Helix 227	AZ2	j	155	167	Right-handed alpha
Helix 228	AZ3	j	170	175	Right-handed alpha
Helix 229	AZ4	k	5	16	Right-handed alpha
Helix 230	AZ5	k	35	39	Right-handed 310
Helix 231	AZ6	k	42	50	Right-handed alpha
Helix 232	AZ7	k	106	109	Right-handed 310
Helix 233	AZ8	k	110	119	Right-handed alpha
Helix 234	AZ9	k	154	159	Right-handed alpha
Helix 235	BA1	l	81	85	Right-handed 310
Helix 236	BA2	l	90	105	Right-handed alpha
Helix 237	BA3	l	109	137	Right-handed alpha
Helix 238	BA4	l	142	163	Right-handed alpha
Helix 239	BA5	l	183	201	Right-handed alpha
Helix 240	BA6	l	204	209	Right-handed alpha
Helix 241	BA7	l	213	218	Right-handed alpha
Helix 242	BA8	l	247	252	Right-handed alpha
Helix 243	BA9	l	273	297	Right-handed alpha
Helix 244	BB1	l	307	311	Right-handed 310
Helix 245	BB2	l	371	374	Right-handed 310
Helix 246	BB3	l	375	382	Right-handed alpha
Helix 247	BB4	l	385	389	Right-handed 310
Helix 248	BB5	m	3	33	Right-handed alpha
Helix 249	BB6	m	42	52	Right-handed alpha
Helix 250	BB7	m	61	80	Right-handed alpha
Helix 251	BB8	m	95	105	Right-handed alpha
Helix 252	BB9	m	105	113	Right-handed alpha
Helix 253	BC1	m	119	136	Right-handed alpha
Helix 254	BC2	m	136	152	Right-handed alpha
Helix 255	BC3	m	156	166	Right-handed alpha
Helix 256	BC4	m	172	191	Right-handed alpha
Helix 257	BC5	m	192	196	Right-handed 310
Helix 258	BC6	m	206	210	Right-handed 310
Helix 259	BC7	m	213	240	Right-handed alpha
Helix 260	BC8	m	252	277	Right-handed alpha
Helix 261	BC9	m	284	307	Right-handed alpha
Helix 262	BD1	n	21	31	Right-handed 310
Helix 263	BD2	n	66	70	Right-handed 310
Helix 264	BD3	n	124	132	Right-handed 310
Helix 265	BD4	n	137	144	Right-handed 310

There are 24 sheets in PDB entry 6U8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	127	128	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	73	76	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	54	56	first strand
Strand 2	X	67	69	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	21	22	first strand
Strand 2	J	59	62	parallel
Strand 3	J	87	89	parallel
Strand 4	J	116	120	parallel
Strand 5	N	120	122	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	25	first strand
Strand 2	K	29	32	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	60	first strand
Strand 2	K	67	74	anti-parallel
Strand 3	K	84	86	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	60	first strand
Strand 2	K	67	74	anti-parallel
Strand 3	K	89	90	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	97	98	first strand
Strand 2	K	122	123	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	41	47	anti-parallel
Strand 3	L	50	57	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	321	327	first strand
Strand 2	L	334	340	anti-parallel
Strand 3	L	346	351	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	56	first strand
Strand 2	N	111	114	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	166	168	first strand
Strand 2	N	178	180	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	102	104	first strand
Strand 2	a	135	139	anti-parallel
Strand 3	a	127	128	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	59	62	first strand
Strand 2	h	73	76	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	54	56	first strand
Strand 2	x	67	69	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	21	22	first strand
Strand 2	j	59	62	parallel
Strand 3	j	87	89	parallel
Strand 4	j	116	120	parallel
Strand 5	n	120	122	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	22	25	first strand
Strand 2	k	29	32	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	54	60	first strand
Strand 2	k	67	74	anti-parallel
Strand 3	k	84	86	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	54	60	first strand
Strand 2	k	67	74	anti-parallel
Strand 3	k	89	90	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	97	98	first strand
Strand 2	k	122	123	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	29	30	first strand
Strand 2	l	41	47	anti-parallel
Strand 3	l	50	57	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	321	327	first strand
Strand 2	l	334	340	anti-parallel
Strand 3	l	346	351	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	53	56	first strand
Strand 2	n	111	114	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	166	168	first strand
Strand 2	n	178	180	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8Y