Analysis of interatomic Contacts of Structural Units in PDB entry:
6U8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U8Z entry

There is 1 chain in PDB entry 6U8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 336THR 1074
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6U8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
338 342Right-handed 310
Helix 2
AA2
A
357 371Right-handed alpha
Helix 3
AA3
A
400 411Right-handed alpha
Helix 4
AA4
A
430 442Right-handed alpha
Helix 5
AA5
A
645 649Right-handed 310
Helix 6
AA6
A
687 708Right-handed alpha
Helix 7
AA7
A
709 712Right-handed 310
Helix 8
AA8
A
749 754Right-handed alpha
Helix 9
AA9
A
761 773Right-handed alpha
Helix 10
AB1
A
796 811Right-handed alpha
Helix 11
AB2
A
835 851Right-handed alpha
Helix 12
AB3
A
856 866Right-handed alpha
Helix 13
AB4
A
867 871Right-handed 310
Helix 14
AB5
A
915 920Right-handed alpha
Helix 15
AB6
A
950 965Right-handed alpha
Helix 16
AB7
A
971 975Right-handed 310
Helix 17
AB8
A
979 986Right-handed alpha
Helix 18
AB9
A
986 1003Right-handed alpha
Helix 19
AC1
A
1012 1022Right-handed alpha
Helix 20
AC2
A
1024 1029Right-handed alpha
Helix 21
AC3
A
1029 1038Right-handed alpha
Helix 22
AC4
A
1069 1073Right-handed 310
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There are 4 sheets in PDB entry 6U8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 450first strand
Strand 2
A
414 420parallel
Strand 3
A
375 380parallel
Strand 4
A
466 470anti-parallel
Strand 5
A
474 478anti-parallel
Strand 6
A
681 686anti-parallel
Strand 7
A
347 356anti-parallel
Strand 8
A
738 748anti-parallel
Strand 9
A
926 932anti-parallel
Strand 10
A
906 910anti-parallel
Strand 11
A
898 902anti-parallel
Strand 12
A
776 781anti-parallel
Strand 13
A
816 820parallel
Strand 14
A
873 884parallel
Strand 15
A
887 892anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
759 760first strand
Strand 2
A
738 748anti-parallel
Strand 3
A
926 932anti-parallel
Strand 4
A
906 910anti-parallel
Strand 5
A
898 902anti-parallel
Strand 6
A
776 781anti-parallel
Strand 7
A
816 820parallel
Strand 8
A
873 884parallel
Strand 9
A
1044 1046anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 679first strand
Strand 2
A
894 895parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
936 941first strand
Strand 2
A
944 949anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il