Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U9E entry

There are 6 chains in PDB entry 6U9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 172	SER 817
C	GLY 172	SER 817
E	GLY 172	SER 817
B	LYS 3	ASP 135
D	LYS 3	ASP 135
F	LYS 3	ASP 135

There are 27 helices in PDB entry 6U9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	249	254	Right-handed alpha
Helix 2	AA2	A	328	335	Right-handed alpha
Helix 3	AA3	A	347	353	Right-handed alpha
Helix 4	AA4	A	387	398	Right-handed alpha
Helix 5	AA5	A	423	428	Right-handed alpha
Helix 6	AA6	A	571	581	Right-handed alpha
Helix 7	AA7	A	621	623	Right-handed 310
Helix 8	AA8	A	697	701	Right-handed 310
Helix 9	AA9	A	772	776	Right-handed 310
Helix 10	AB1	C	249	254	Right-handed alpha
Helix 11	AB2	C	328	335	Right-handed alpha
Helix 12	AB3	C	347	353	Right-handed alpha
Helix 13	AB4	C	387	398	Right-handed alpha
Helix 14	AB5	C	423	428	Right-handed alpha
Helix 15	AB6	C	571	581	Right-handed alpha
Helix 16	AB7	C	621	623	Right-handed 310
Helix 17	AB8	C	697	701	Right-handed 310
Helix 18	AB9	C	772	776	Right-handed 310
Helix 19	AC1	E	249	254	Right-handed alpha
Helix 20	AC2	E	328	335	Right-handed alpha
Helix 21	AC3	E	347	353	Right-handed alpha
Helix 22	AC4	E	387	398	Right-handed alpha
Helix 23	AC5	E	423	428	Right-handed alpha
Helix 24	AC6	E	571	581	Right-handed alpha
Helix 25	AC7	E	621	623	Right-handed 310
Helix 26	AC8	E	697	701	Right-handed 310
Helix 27	AC9	E	772	776	Right-handed 310

There are 40 sheets in PDB entry 6U9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	188	first strand
Strand 2	A	260	269	anti-parallel
Strand 3	A	283	291	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	223	228	anti-parallel
Strand 3	A	236	241	anti-parallel
Strand 4	A	320	325	anti-parallel
Strand 5	A	300	301	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	223	228	anti-parallel
Strand 3	A	559	569	anti-parallel
Strand 4	A	613	619	anti-parallel
Strand 5	A	523	526	anti-parallel
Strand 6	A	451	454	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	378	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	415	417	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	A	490	491	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	466	468	anti-parallel
Strand 3	A	499	500	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	640	first strand
Strand 2	A	735	741	anti-parallel
Strand 3	A	744	750	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	695	first strand
Strand 2	A	710	713	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	783	first strand
Strand 2	A	788	790	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	800	802	first strand
Strand 2	A	814	816	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	188	first strand
Strand 2	C	260	269	anti-parallel
Strand 3	C	283	291	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	233	241	anti-parallel
Strand 4	C	223	228	anti-parallel
Strand 5	C	559	569	anti-parallel
Strand 6	C	613	619	anti-parallel
Strand 7	C	523	526	anti-parallel
Strand 8	C	451	454	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	344	first strand
Strand 2	C	378	380	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	415	417	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	462	first strand
Strand 2	C	490	491	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	480	481	first strand
Strand 2	C	466	468	anti-parallel
Strand 3	C	499	500	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	637	640	first strand
Strand 2	C	735	741	anti-parallel
Strand 3	C	744	750	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	692	695	first strand
Strand 2	C	710	713	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	783	first strand
Strand 2	C	788	790	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	800	802	first strand
Strand 2	C	814	816	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	188	first strand
Strand 2	E	260	269	anti-parallel
Strand 3	E	283	291	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	301	first strand
Strand 2	E	320	325	anti-parallel
Strand 3	E	233	241	anti-parallel
Strand 4	E	223	228	anti-parallel
Strand 5	E	559	569	anti-parallel
Strand 6	E	613	619	anti-parallel
Strand 7	E	523	526	anti-parallel
Strand 8	E	451	454	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	344	first strand
Strand 2	E	378	380	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	365	first strand
Strand 2	E	415	417	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	462	first strand
Strand 2	E	490	491	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	480	481	first strand
Strand 2	E	466	468	anti-parallel
Strand 3	E	499	500	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	637	640	first strand
Strand 2	E	735	741	anti-parallel
Strand 3	E	744	750	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	692	695	first strand
Strand 2	E	710	713	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	781	783	first strand
Strand 2	E	788	790	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	800	802	first strand
Strand 2	E	814	816	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	25	31	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	B	43	47	parallel
Strand 3	F	51	55	parallel
Strand 4	F	60	63	anti-parallel
Strand 5	F	68	71	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	60	63	anti-parallel
Strand 3	B	51	55	anti-parallel
Strand 4	D	43	47	parallel
Strand 5	F	35	36	parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	84	87	anti-parallel
Strand 3	B	92	95	anti-parallel
Strand 4	B	99	103	anti-parallel
Strand 5	F	106	109	parallel
Strand 6	D	115	117	parallel
Strand 7	B	123	125	parallel
Strand 8	F	131	132	parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	D	123	125	parallel
Strand 3	F	115	117	parallel
Strand 4	B	106	109	parallel
Strand 5	D	99	103	parallel
Strand 6	D	92	95	anti-parallel
Strand 7	D	84	87	anti-parallel
Strand 8	D	76	79	anti-parallel

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There are 8 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	F	123	125	parallel
Strand 3	B	115	117	parallel
Strand 4	D	106	109	parallel
Strand 5	F	99	103	parallel
Strand 6	F	92	95	anti-parallel
Strand 7	F	84	87	anti-parallel
Strand 8	F	76	79	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	14	20	anti-parallel
Strand 3	D	25	31	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	60	63	anti-parallel
Strand 3	D	51	55	anti-parallel
Strand 4	F	43	47	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	14	20	anti-parallel
Strand 3	F	25	31	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9E