Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U9F entry

There are 6 chains in PDB entry 6U9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 817
C	MET 1	SER 817
E	MET 1	SER 817
B	LYS 3	ASP 135
D	LYS 3	ASP 135
F	LYS 3	ASP 135

There are 45 helices in PDB entry 6U9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	28	36	Right-handed alpha
Helix 3	AA3	A	43	52	Right-handed alpha
Helix 4	AA4	A	65	86	Right-handed alpha
Helix 5	AA5	A	96	107	Right-handed alpha
Helix 6	AA6	A	125	146	Right-handed alpha
Helix 7	AA7	A	154	158	Right-handed alpha
Helix 8	AA8	A	158	166	Right-handed alpha
Helix 9	AA9	A	246	254	Right-handed alpha
Helix 10	AB1	A	328	336	Right-handed alpha
Helix 11	AB2	A	347	354	Right-handed alpha
Helix 12	AB3	A	387	399	Right-handed alpha
Helix 13	AB4	A	423	428	Right-handed alpha
Helix 14	AB5	A	573	581	Right-handed alpha
Helix 15	AB6	A	772	776	Right-handed 310
Helix 16	AB7	C	4	9	Right-handed alpha
Helix 17	AB8	C	28	36	Right-handed alpha
Helix 18	AB9	C	43	52	Right-handed alpha
Helix 19	AC1	C	65	86	Right-handed alpha
Helix 20	AC2	C	96	107	Right-handed alpha
Helix 21	AC3	C	125	146	Right-handed alpha
Helix 22	AC4	C	154	158	Right-handed alpha
Helix 23	AC5	C	158	166	Right-handed alpha
Helix 24	AC6	C	246	254	Right-handed alpha
Helix 25	AC7	C	328	336	Right-handed alpha
Helix 26	AC8	C	347	354	Right-handed alpha
Helix 27	AC9	C	387	399	Right-handed alpha
Helix 28	AD1	C	423	428	Right-handed alpha
Helix 29	AD2	C	573	581	Right-handed alpha
Helix 30	AD3	C	772	776	Right-handed 310
Helix 31	AD4	E	4	9	Right-handed alpha
Helix 32	AD5	E	28	36	Right-handed alpha
Helix 33	AD6	E	43	52	Right-handed alpha
Helix 34	AD7	E	65	86	Right-handed alpha
Helix 35	AD8	E	96	107	Right-handed alpha
Helix 36	AD9	E	125	146	Right-handed alpha
Helix 37	AE1	E	154	158	Right-handed alpha
Helix 38	AE2	E	158	166	Right-handed alpha
Helix 39	AE3	E	246	254	Right-handed alpha
Helix 40	AE4	E	328	336	Right-handed alpha
Helix 41	AE5	E	347	354	Right-handed alpha
Helix 42	AE6	E	387	399	Right-handed alpha
Helix 43	AE7	E	423	428	Right-handed alpha
Helix 44	AE8	E	573	581	Right-handed alpha
Helix 45	AE9	E	772	776	Right-handed 310

There are 36 sheets in PDB entry 6U9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	179	188	anti-parallel
Strand 3	A	260	269	anti-parallel
Strand 4	A	283	292	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	327	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	559	569	anti-parallel
Strand 5	A	610	619	anti-parallel
Strand 6	A	522	526	anti-parallel
Strand 7	A	451	455	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	320	321	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	376	380	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	415	419	parallel
Strand 3	A	402	404	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	464	first strand
Strand 2	A	490	496	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	480	481	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	640	first strand
Strand 2	A	735	741	anti-parallel
Strand 3	A	744	750	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	695	first strand
Strand 2	A	710	713	anti-parallel

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There are 15 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	781	first strand
Strand 2	A	790	792	anti-parallel
Strand 3	A	800	805	anti-parallel
Strand 4	A	811	816	anti-parallel
Strand 5	B	5	8	anti-parallel
Strand 6	B	14	20	anti-parallel
Strand 7	B	27	31	anti-parallel
Strand 8	B	35	39	anti-parallel
Strand 9	F	43	47	parallel
Strand 10	D	52	55	parallel
Strand 11	D	60	63	anti-parallel
Strand 12	D	68	72	anti-parallel
Strand 13	D	75	79	anti-parallel
Strand 14	D	84	88	anti-parallel
Strand 15	D	91	95	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	179	188	anti-parallel
Strand 3	C	260	269	anti-parallel
Strand 4	C	283	292	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	327	first strand
Strand 2	C	233	238	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	559	569	anti-parallel
Strand 5	C	610	619	anti-parallel
Strand 6	C	522	526	anti-parallel
Strand 7	C	451	455	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	320	321	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	376	380	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	415	419	parallel
Strand 3	C	402	404	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	464	first strand
Strand 2	C	490	496	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	467	first strand
Strand 2	C	480	481	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	637	640	first strand
Strand 2	C	735	741	anti-parallel
Strand 3	C	744	750	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	692	695	first strand
Strand 2	C	710	713	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	779	781	first strand
Strand 2	C	790	792	anti-parallel
Strand 3	C	800	805	anti-parallel
Strand 4	C	811	816	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	215	first strand
Strand 2	E	179	188	anti-parallel
Strand 3	E	260	269	anti-parallel
Strand 4	E	283	292	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	324	327	first strand
Strand 2	E	233	238	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	559	569	anti-parallel
Strand 5	E	610	619	anti-parallel
Strand 6	E	522	526	anti-parallel
Strand 7	E	451	455	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	241	first strand
Strand 2	E	320	321	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	346	first strand
Strand 2	E	376	380	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	365	first strand
Strand 2	E	415	419	parallel
Strand 3	E	402	404	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	464	first strand
Strand 2	E	490	496	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	466	467	first strand
Strand 2	E	480	481	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	637	640	first strand
Strand 2	E	735	741	anti-parallel
Strand 3	E	744	750	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	692	695	first strand
Strand 2	E	710	713	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	779	781	first strand
Strand 2	E	790	792	anti-parallel
Strand 3	E	800	805	anti-parallel
Strand 4	E	811	816	anti-parallel

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There are 11 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	14	20	anti-parallel
Strand 3	D	27	31	anti-parallel
Strand 4	D	35	39	anti-parallel
Strand 5	B	43	47	parallel
Strand 6	F	52	55	parallel
Strand 7	F	60	63	anti-parallel
Strand 8	F	68	72	anti-parallel
Strand 9	F	75	79	anti-parallel
Strand 10	F	84	88	anti-parallel
Strand 11	F	91	95	anti-parallel

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There are 11 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	95	first strand
Strand 2	B	84	88	anti-parallel
Strand 3	B	75	79	anti-parallel
Strand 4	B	68	72	anti-parallel
Strand 5	B	60	63	anti-parallel
Strand 6	B	51	55	anti-parallel
Strand 7	D	43	47	parallel
Strand 8	F	35	39	parallel
Strand 9	F	27	31	anti-parallel
Strand 10	F	14	20	anti-parallel
Strand 11	F	5	7	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	F	107	109	parallel
Strand 3	D	115	117	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	B	107	109	parallel
Strand 3	F	115	117	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	D	107	109	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	F	131	132	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9F