Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U9G entry

There are 6 chains in PDB entry 6U9G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 78	SER 817
C	TYR 78	SER 817
E	TYR 78	SER 817
B	LYS 3	ASP 135
D	LYS 3	ASP 135
F	LYS 3	ASP 135

There are 45 helices in PDB entry 6U9G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	92	Right-handed alpha
Helix 2	AA2	A	93	95	Right-handed 310
Helix 3	AA3	A	106	115	Right-handed alpha
Helix 4	AA4	A	119	124	Right-handed alpha
Helix 5	AA5	A	131	144	Right-handed alpha
Helix 6	AA6	A	161	171	Right-handed alpha
Helix 7	AA7	A	246	248	Right-handed 310
Helix 8	AA8	A	249	254	Right-handed alpha
Helix 9	AA9	A	328	335	Right-handed alpha
Helix 10	AB1	A	347	353	Right-handed alpha
Helix 11	AB2	A	387	398	Right-handed alpha
Helix 12	AB3	A	423	428	Right-handed alpha
Helix 13	AB4	A	571	581	Right-handed alpha
Helix 14	AB5	A	621	623	Right-handed 310
Helix 15	AB6	A	772	776	Right-handed 310
Helix 16	AB7	C	79	92	Right-handed alpha
Helix 17	AB8	C	93	95	Right-handed 310
Helix 18	AB9	C	106	115	Right-handed alpha
Helix 19	AC1	C	119	124	Right-handed alpha
Helix 20	AC2	C	131	144	Right-handed alpha
Helix 21	AC3	C	161	171	Right-handed alpha
Helix 22	AC4	C	246	248	Right-handed 310
Helix 23	AC5	C	249	254	Right-handed alpha
Helix 24	AC6	C	328	335	Right-handed alpha
Helix 25	AC7	C	347	353	Right-handed alpha
Helix 26	AC8	C	387	398	Right-handed alpha
Helix 27	AC9	C	423	428	Right-handed alpha
Helix 28	AD1	C	571	581	Right-handed alpha
Helix 29	AD2	C	621	623	Right-handed 310
Helix 30	AD3	C	772	776	Right-handed 310
Helix 31	AD4	E	79	92	Right-handed alpha
Helix 32	AD5	E	93	95	Right-handed 310
Helix 33	AD6	E	106	115	Right-handed alpha
Helix 34	AD7	E	119	124	Right-handed alpha
Helix 35	AD8	E	131	144	Right-handed alpha
Helix 36	AD9	E	161	171	Right-handed alpha
Helix 37	AE1	E	246	248	Right-handed 310
Helix 38	AE2	E	249	254	Right-handed alpha
Helix 39	AE3	E	328	335	Right-handed alpha
Helix 40	AE4	E	347	353	Right-handed alpha
Helix 41	AE5	E	387	398	Right-handed alpha
Helix 42	AE6	E	423	428	Right-handed alpha
Helix 43	AE7	E	571	581	Right-handed alpha
Helix 44	AE8	E	621	623	Right-handed 310
Helix 45	AE9	E	772	776	Right-handed 310

There are 28 sheets in PDB entry 6U9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	188	first strand
Strand 2	A	260	269	anti-parallel
Strand 3	A	283	291	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	221	228	anti-parallel
Strand 3	A	236	241	anti-parallel
Strand 4	A	320	325	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	221	228	anti-parallel
Strand 3	A	559	569	anti-parallel
Strand 4	A	613	619	anti-parallel
Strand 5	A	523	525	anti-parallel
Strand 6	A	452	454	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	378	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	415	417	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	461	468	anti-parallel
Strand 3	A	490	500	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	714	first strand
Strand 2	A	691	695	anti-parallel
Strand 3	A	637	642	anti-parallel
Strand 4	A	734	741	anti-parallel
Strand 5	A	744	750	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	684	first strand
Strand 2	C	752	753	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	753	first strand
Strand 2	E	683	684	anti-parallel

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There are 18 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	783	first strand
Strand 2	A	788	793	anti-parallel
Strand 3	A	800	805	anti-parallel
Strand 4	A	811	816	anti-parallel
Strand 5	B	5	8	anti-parallel
Strand 6	B	14	20	anti-parallel
Strand 7	B	26	31	anti-parallel
Strand 8	B	36	38	anti-parallel
Strand 9	F	43	46	parallel
Strand 10	D	51	53	parallel
Strand 11	D	61	63	anti-parallel
Strand 12	D	68	72	anti-parallel
Strand 13	D	75	80	anti-parallel
Strand 14	D	83	88	anti-parallel
Strand 15	D	91	95	anti-parallel
Strand 16	D	100	104	anti-parallel
Strand 17	B	107	109	parallel
Strand 18	F	115	117	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	188	first strand
Strand 2	C	260	269	anti-parallel
Strand 3	C	283	291	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	221	228	anti-parallel
Strand 3	C	236	241	anti-parallel
Strand 4	C	320	325	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	221	228	anti-parallel
Strand 3	C	559	569	anti-parallel
Strand 4	C	613	619	anti-parallel
Strand 5	C	523	525	anti-parallel
Strand 6	C	452	454	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	344	first strand
Strand 2	C	378	380	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	415	417	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	481	first strand
Strand 2	C	461	468	anti-parallel
Strand 3	C	490	500	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	714	first strand
Strand 2	C	691	695	anti-parallel
Strand 3	C	637	642	anti-parallel
Strand 4	C	734	741	anti-parallel
Strand 5	C	744	750	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	683	684	first strand
Strand 2	E	752	753	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	783	first strand
Strand 2	C	788	793	anti-parallel
Strand 3	C	800	805	anti-parallel
Strand 4	C	811	816	anti-parallel
Strand 5	D	5	7	anti-parallel
Strand 6	D	14	20	anti-parallel
Strand 7	D	26	31	anti-parallel
Strand 8	D	35	38	anti-parallel
Strand 9	B	43	46	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	188	first strand
Strand 2	E	260	269	anti-parallel
Strand 3	E	283	291	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	234	first strand
Strand 2	E	221	228	anti-parallel
Strand 3	E	236	241	anti-parallel
Strand 4	E	320	325	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	233	234	first strand
Strand 2	E	221	228	anti-parallel
Strand 3	E	559	569	anti-parallel
Strand 4	E	613	619	anti-parallel
Strand 5	E	523	525	anti-parallel
Strand 6	E	452	454	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	344	first strand
Strand 2	E	378	380	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	365	first strand
Strand 2	E	415	417	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	479	481	first strand
Strand 2	E	461	468	anti-parallel
Strand 3	E	490	500	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	710	714	first strand
Strand 2	E	691	695	anti-parallel
Strand 3	E	637	642	anti-parallel
Strand 4	E	734	741	anti-parallel
Strand 5	E	744	750	anti-parallel

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There are 18 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	778	783	first strand
Strand 2	E	788	793	anti-parallel
Strand 3	E	800	805	anti-parallel
Strand 4	E	811	816	anti-parallel
Strand 5	F	5	7	anti-parallel
Strand 6	F	14	20	anti-parallel
Strand 7	F	26	31	anti-parallel
Strand 8	F	36	38	anti-parallel
Strand 9	D	43	46	parallel
Strand 10	B	51	53	parallel
Strand 11	B	61	63	anti-parallel
Strand 12	B	68	72	anti-parallel
Strand 13	B	75	80	anti-parallel
Strand 14	B	83	88	anti-parallel
Strand 15	B	91	95	anti-parallel
Strand 16	B	100	104	anti-parallel
Strand 17	F	107	109	parallel
Strand 18	D	115	117	parallel

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There are 10 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	61	63	anti-parallel
Strand 3	F	68	72	anti-parallel
Strand 4	F	75	80	anti-parallel
Strand 5	F	83	88	anti-parallel
Strand 6	F	91	95	anti-parallel
Strand 7	F	100	104	anti-parallel
Strand 8	D	107	109	parallel
Strand 9	B	115	117	parallel
Strand 10	F	124	125	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U9G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9G