Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6U9J entry

There are 4 chains in PDB entry 6U9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4HIS 163
B
 VAL 4GLU 162
C
 VAL 4GLU 162
D
 VAL 4GLU 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6U9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
17 26Right-handed alpha
Helix 3
AA3
A
28 35Right-handed alpha
Helix 4
AA4
A
46 55Right-handed alpha
Helix 5
AA5
A
101 104Right-handed 310
Helix 6
AA6
A
146 161Right-handed alpha
Helix 7
AA7
B
5 11Right-handed alpha
Helix 8
AA8
B
17 25Right-handed alpha
Helix 9
AA9
B
28 35Right-handed alpha
Helix 10
AB1
B
46 55Right-handed alpha
Helix 11
AB2
B
101 104Right-handed 310
Helix 12
AB3
B
146 162Right-handed alpha
Helix 13
AB4
C
5 10Right-handed alpha
Helix 14
AB5
C
17 25Right-handed alpha
Helix 15
AB6
C
28 35Right-handed alpha
Helix 16
AB7
C
46 55Right-handed alpha
Helix 17
AB8
C
101 104Right-handed 310
Helix 18
AB9
C
146 161Right-handed alpha
Helix 19
AC1
D
5 11Right-handed alpha
Helix 20
AC2
D
17 25Right-handed alpha
Helix 21
AC3
D
28 35Right-handed alpha
Helix 22
AC4
D
46 55Right-handed alpha
Helix 23
AC5
D
101 104Right-handed 310
Helix 24
AC6
D
146 161Right-handed alpha
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There are 4 sheets in PDB entry 6U9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
106 114anti-parallel
Strand 3
A
117 125anti-parallel
Strand 4
A
131 136anti-parallel
Strand 5
A
59 65anti-parallel
Strand 6
A
69 76anti-parallel
Strand 7
C
95 99anti-parallel
Strand 8
C
86 92anti-parallel
Strand 9
C
80 83anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
95 99anti-parallel
Strand 4
C
69 76anti-parallel
Strand 5
C
59 65anti-parallel
Strand 6
C
131 137anti-parallel
Strand 7
C
117 125anti-parallel
Strand 8
C
106 114anti-parallel
Strand 9
C
39 43anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
106 114anti-parallel
Strand 3
B
117 125anti-parallel
Strand 4
B
131 136anti-parallel
Strand 5
B
59 65anti-parallel
Strand 6
B
69 76anti-parallel
Strand 7
D
95 99anti-parallel
Strand 8
D
86 89anti-parallel
Strand 9
D
80 83anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
86 89anti-parallel
Strand 3
B
95 99anti-parallel
Strand 4
D
69 76anti-parallel
Strand 5
D
59 65anti-parallel
Strand 6
D
131 137anti-parallel
Strand 7
D
117 125anti-parallel
Strand 8
D
106 114anti-parallel
Strand 9
D
39 43anti-parallel
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