Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U9V entry

There are 3 chains in PDB entry 6U9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 4	TYR 595
B	CYS 4	TYR 595
C	CYS 4	TYR 595

There are 63 helices in PDB entry 6U9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	11	Right-handed alpha
Helix 2	AA2	A	23	49	Right-handed alpha
Helix 3	AA3	A	89	94	Right-handed alpha
Helix 4	AA4	A	231	238	Right-handed alpha
Helix 5	AA5	A	241	248	Right-handed alpha
Helix 6	AA6	A	263	267	Right-handed 310
Helix 7	AA7	A	329	341	Right-handed alpha
Helix 8	AA8	A	342	344	Right-handed 310
Helix 9	AA9	A	345	359	Right-handed alpha
Helix 10	AB1	A	360	366	Right-handed alpha
Helix 11	AB2	A	366	372	Right-handed alpha
Helix 12	AB3	A	374	377	Right-handed 310
Helix 13	AB4	A	378	388	Right-handed alpha
Helix 14	AB5	A	435	440	Right-handed alpha
Helix 15	AB6	A	488	492	Right-handed 310
Helix 16	AB7	A	506	509	Right-handed 310
Helix 17	AB8	A	510	517	Right-handed alpha
Helix 18	AB9	A	519	531	Right-handed alpha
Helix 19	AC1	A	541	558	Right-handed alpha
Helix 20	AC2	A	560	565	Right-handed alpha
Helix 21	AC3	A	570	581	Right-handed alpha
Helix 22	AC4	B	6	11	Right-handed alpha
Helix 23	AC5	B	23	49	Right-handed alpha
Helix 24	AC6	B	89	94	Right-handed alpha
Helix 25	AC7	B	231	237	Right-handed alpha
Helix 26	AC8	B	241	248	Right-handed alpha
Helix 27	AC9	B	263	267	Right-handed 310
Helix 28	AD1	B	329	341	Right-handed alpha
Helix 29	AD2	B	342	344	Right-handed 310
Helix 30	AD3	B	345	359	Right-handed alpha
Helix 31	AD4	B	360	366	Right-handed alpha
Helix 32	AD5	B	366	372	Right-handed alpha
Helix 33	AD6	B	374	377	Right-handed 310
Helix 34	AD7	B	378	388	Right-handed alpha
Helix 35	AD8	B	435	440	Right-handed alpha
Helix 36	AD9	B	488	492	Right-handed 310
Helix 37	AE1	B	506	509	Right-handed 310
Helix 38	AE2	B	510	517	Right-handed alpha
Helix 39	AE3	B	519	531	Right-handed alpha
Helix 40	AE4	B	541	558	Right-handed alpha
Helix 41	AE5	B	560	565	Right-handed alpha
Helix 42	AE6	B	570	581	Right-handed alpha
Helix 43	AE7	C	6	11	Right-handed alpha
Helix 44	AE8	C	23	49	Right-handed alpha
Helix 45	AE9	C	89	94	Right-handed alpha
Helix 46	AF1	C	231	237	Right-handed alpha
Helix 47	AF2	C	241	248	Right-handed alpha
Helix 48	AF3	C	263	267	Right-handed 310
Helix 49	AF4	C	329	341	Right-handed alpha
Helix 50	AF5	C	342	344	Right-handed 310
Helix 51	AF6	C	345	359	Right-handed alpha
Helix 52	AF7	C	361	366	Right-handed alpha
Helix 53	AF8	C	366	372	Right-handed alpha
Helix 54	AF9	C	374	377	Right-handed 310
Helix 55	AG1	C	378	388	Right-handed alpha
Helix 56	AG2	C	435	440	Right-handed alpha
Helix 57	AG3	C	488	492	Right-handed 310
Helix 58	AG4	C	506	509	Right-handed 310
Helix 59	AG5	C	510	517	Right-handed alpha
Helix 60	AG6	C	519	531	Right-handed alpha
Helix 61	AG7	C	541	558	Right-handed alpha
Helix 62	AG8	C	560	565	Right-handed alpha
Helix 63	AG9	C	570	581	Right-handed alpha

There are 21 sheets in PDB entry 6U9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	B	18	22	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	A	18	22	parallel
Strand 3	C	12	16	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	304	328	anti-parallel
Strand 3	A	251	261	parallel
Strand 4	A	271	277	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	101	116	anti-parallel
Strand 3	A	304	328	anti-parallel
Strand 4	A	292	301	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	203	206	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	228	230	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	85	88	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	409	412	anti-parallel
Strand 3	A	427	429	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	C	18	22	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	304	328	anti-parallel
Strand 3	B	250	261	parallel
Strand 4	B	271	277	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	101	116	anti-parallel
Strand 3	B	304	328	anti-parallel
Strand 4	B	292	301	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	228	230	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	85	88	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	409	412	anti-parallel
Strand 3	B	427	429	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	304	328	anti-parallel
Strand 3	C	250	261	parallel
Strand 4	C	271	277	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	101	116	anti-parallel
Strand 3	C	304	328	anti-parallel
Strand 4	C	292	301	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	203	206	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	228	230	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	85	88	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	402	first strand
Strand 2	C	409	411	anti-parallel
Strand 3	C	427	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9V